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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTACTTTAAAAACCCGCACAAACCCTAACTCTTGGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctcacctctcttcttcctctttgatgcttcattgcaaggcttggtgcatttctcattatagatcttcatttcgctgttacatttccgagacact...

Basic information

species Glycine max
transcript GLYMA09G34760.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021889|gb|BM092923.1|BM092923
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|193419084|gb|FK385268.1|FK385268
EST:     CTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|58022980|gb|CX709721.1|CX709721
EST:     ACAAGCCTCAG                         GTAAGCCCAAACCATGGTTAAGCATACCAATGTTATCCC-AACGGGACACT
genomic: ACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAAC-GGACACT
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     CTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|298174123|gb|HO017459.1|HO017459
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|15337650|gb|BI498306.1|BI498306
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     AGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: AGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC--                         ---AGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|207728942|gb|GD708742.1|GD708742
EST:     CCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     TCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: TCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|58014722|gb|CX701464.1|CX701464
EST:     GAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|4313307|gb|AI460426.1|AI460426
EST:     GCTGCTGTTCTTGCGCGTGAACAAGCCT-AG                         GTAA-CCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|21994589|gb|BQ786117.1|BQ786117
EST:     GAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|193572958|gb|FK532481.1|FK532481
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGGCACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|209707172|gb|BW656790.1|BW656790
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|208262966|gb|GE061546.1|GE061546
EST:     GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: ATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTC--                         ---AGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: TTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|207730393|gb|GD708849.1|GD708849
EST:     TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: TCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|14991504|gb|BI317177.1|BI317177
EST:     AACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: AACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|18730580|gb|BM525958.1|BM525958
EST:     CGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     CGTAGCTACTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|9902923|gb|BE611891.1|BE611891
EST:     CTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|13481580|gb|BG510923.1|BG510923
EST:     GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: GCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAG                         GTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT
genomic: CGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctca ... aatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTTACTTTAAAAACCCGCACAAACCCTAACTCTTGGCTCCGCCATTTTTCGTAGCTGCTGTTCTTGCGCGTGAACAAGCCTCAGgtaactctcacctctcttcttcctctttgatgcttcattgcaaggcttggtgcatttctcattatagatcttcatttcgctgttacatttccgagacact

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT