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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttcttcttcttctctctctctcttccaactctttcgattttcggtagcgtacttttccttctctgaattcaatcgtctttctttctctatttg...

Basic information

species Glycine max
transcript GLYMA09G34650.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395813|gb|EV265690.1|EV265690
EST:     GTGTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTAC-                         --GAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GTGTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|209720586|gb|BW654439.1|BW654439
EST:     GTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACG                         AAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|151400423|gb|EV270237.1|EV270237
EST:     GTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTAC-                         --GAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|298167526|gb|HO012789.1|HO012789
EST:     CAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACG                         AAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: CAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|38192748|gb|CF921954.1|CF921954
EST:     GTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTAC-                         --GAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GTCTGTGGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|14999869|gb|BI320683.1|BI320683
EST:     GGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACG                         AAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GGCAGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
EST: gi|15288136|gb|BI472027.1|BI472027
EST:     GCCACACGTCTTGGCAGTTCTCTTCTCTGATTAC-                         --GAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG
genomic: GCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGgtacttcttc ... ttgtttctagAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATG