Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgtatatccctatacctatatatgtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag...
Basic information
species | Glycine max |
transcript | GLYMA09G34470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0053g00460.t01 (Vitis vinifera), 5'ss of exon 1
TGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgtatatccctatacctatatat-gtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag----
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TGTGGTGATCTGCACCATGTCTGGGGTTCATTTCAGGTCTCACAACATTTTGTTGCAGCTCAAACTTGTTGAGGCCATCAAAGAAGCTGGAAACATTAAGgtatat---atatacatattgttttaagtcatgtagttcctttttgcat-atagtattttgatgagtgcatcaaccatatctg-tagtacaaaggtataataatc
upper sequence: GLYMA09G34470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0033g00270.t01 (Vitis vinifera), 5'ss of exon 1
TGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgt-tgtatatccctatacctatatatgtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag
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TGTGGTGATCTGCACCATGTCTGGGGTTCATTTCAGGTCTCACAACCTTTTGTTGCAGCTCAAACTTGTCGACGCCATCAAAGAAGCTGGAAACATTAAGgtatgtacatatatatatttccttttagaacctctgcaaagtttggcataatttactaaaggagatgttttaattaaggtctaa-attagctctttattta
upper sequence: GLYMA09G34470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0033g00290.t01 (Vitis vinifera), 5'ss of exon 1
TGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgtatatccctatacctatatat-gtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag----
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TATGGTGATCTGCACCATGTCTGGGTCTCATTCCAGGTCTCACAACATTTTGTTTCAGCTCAAACTTGTTGAGGCCATCAAAGAAGCTGGAAACATTAAGgtatat---atatacatattgttttaagtcatgtagttcctttttgcat-atagtattttgatgagcgcatcaaccatatctg-tagtacaaaggtataataatc
upper sequence: GLYMA09G34470.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0033g00260.t01 (Vitis vinifera), 5'ss of exon 1
TGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgtatatccctatacctatatatgtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag--------
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TGTGGTGATCTGCACCATGTCTGGGGTTCATTTCAGGAGTCACAACCTTTTGATGCAGCTCAAACTTGTTGAGGCCATCAAAGAAGCTGGAAACATTAAGgtacgtgtgagatgcgtat-------tagacaagagaaaggggaggataatttt-ttgtcatgaatgaagacataaagtagtctgaatattaatggaaatacatacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298170317|gb|HO018941.1|HO018941EST: TGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAG CGTTTCTTGCCTTCAGAATTTGGCATGGACCCTGCACTTATGGGACATGCA
genomic: TGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgta ... ttttctctagCGTTTCTTGCCTTCAGAATTTGGCATGGACCCTGCACTTATGGGACATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGTGATTTGCACCATGTCTGGTGTTCATTTTCGCTCTCACAACTTGTTGGTGCAGCTCAAACTTGTGGAGGCCATCAAGGCTGCAGGGAACGTTAAGgtatgttgtatatccctatacctatatatgtataatatgttgtagcattattcaatctttttaagtaaaaaattgaggtagaatgatagatagttaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaaa