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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCGGCATCTTTCAGATCAACACCGCTGTCTCCACGTTCCAGAGACTCGTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcatcatcatcacactctcttatatatatatgatttgcttcgattttgtggtttggattgatcggatttcgtgttgcttctatttaagataaggattcgacgattgaatcgagtttttgttcgcaatttgcag

Basic information

species Glycine max
transcript GLYMA09G33950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g15110.1 (Oryza sativa), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCTGTCTCCACGTTCCAGAGACTCGTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcatcatcatcacactctct-tatatatatatgatttgcttcgattttgtggtttggattg-atcggatttcgtgttgcttctatttaagataaggattcgacgattgaatcgagtttttgttcgcaatttgcag
| || ||  | || ||||||||||| || || || ||||||||| | || |||||||| || || || ||||||||||||||||| ||||| || | | ||||||     |  |    ||  |||| ||  ||       | || || | |||   ||||||  ||| | |||   ||| |  |  || ||||  | |   |||| |                                  
CGTCGGGGGTGTTCCAGATCAACACGGCGGTGTCGACGTTCCAGCGGCTGGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctccccccgcgccatactctctacctaccccacgtctgtttggtttt---ggtttgatttggagcgggggtcggg--ggatcgattttggttc--gatttg----------------------------------

upper sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G017329_T01 (Zea mays), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCTGTCTCCACGTTCCAGAGACTCGTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcatcatcatcacactctcttatatatatatgatttgcttcgattttgtggtttggattgatcggatttcgtgttgcttctatttaagataaggattcgacgattgaatcgagtttttgttcgcaatttgcag
| || ||| |||| |||||||||||||| ||| ||||||||||| | || |||||||| || || || ||||||||||||||||| ||||| || | | |||| |  |     |    ||| | | ||      |     |  |||          |  ||    |||||   | | | |     | || |  | |  ||  | |  |||                             
CGTCGGGCGTCTTCCAGATCAACACCGCCGTCGCCACGTTCCAGCGCCTTGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGACAGGATgtgcgtccgctcccc---cacccgcctacccgcct-----taccttttgccccccagcctgttccgatcgccgtacctttaatccccatct--gttttggtattgcggat-----------------------------

upper sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
CTTCCGGCATCTTTCAGATCAACACCGCTGTCTCCACGTTCCAGAGACTCGTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcatcatcatcacactctcttatatatatatgatttgcttcgattttgtggtttggattgatcggatttcgtgttgcttctatttaagataaggattcgacgattgaatcgagtttttgttcgcaatttgcag
| || ||| |||| |||||||||||||| ||  ||||||||||| | ||||||||||| || || || |||||||| |||||||| ||||| || | | |||  |  |  | |     |  |  || |  |  |    || || || ||||    |  |||  |  | |    | ||| ||| ||          |  |    |  ||                               
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctcca----atctgttttgatt----gccttgcctcaacccccatccgttttgatttcgc--ggactcggtccgctccggc-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315437|gb|GR825246.1|GR825246
EST:     GTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCT                         GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA
genomic: GTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcat ... caatttgcagGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAA