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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttcttttcttttctttttcttcactccactatgttaacgatag

Basic information

species Glycine max
transcript GLYMA09G33920.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G33920.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G384339_T02 (Zea mays), 5'ss of exon 2
CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttcttttctttt-ctttttcttcactccactat--gttaacgatag--------------------------------------------
||||||||| ||| || | |||||||||||| |||||||  ||||||| |||||||| |||| ||||||||||   ||||| || ||| | ||||| |||||| ||       |   |  |  |  |    || | |  || |  ||||    | |                                            
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctggctgcgcacaaatgggatgtcacaaatccggaaggtacgctacta

upper sequence: GLYMA09G33920.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G115456_T01 (Zea mays), 5'ss of exon 1
CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttcttttcttttctttttcttcactccactatgttaacgatag-----------------------------------------------
||||||||| ||| || | |||||||||||| | |||||  ||||||| |||||||| |||| ||||||||||  |||||| || ||| | ||||| |||||| ||  ||  |     || | | || || | ||    | ||||  ||                                                   
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGGGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCCTTCGTCAGGCAGCTCAACACCTACgtaagtggttgacccgctttgtttcttcctcctctgggatttgtttccgtgctcactgctcgcacgagcgggatgtcgcgacccgcgacaaaatgaatca

upper sequence: GLYMA09G33920.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G17750.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttcttttcttttctt--tttcttcac--tccactatgttaacgatag------------------------------------------------------------------------------------------
|||||| || ||||| ||||| |||||  |  | || ||| | || |||||||||||||||||||| ||||||||||| ||| | ||||||||||| || ||| || |   |  | ||    | |  ||||| |||  |  | |    |||   ||                                                                                           
CTTCATTGTTTGGGATCCACCGGAGTTTTCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAGTTAAACACCTATgtaagtataaattctctcgcgccctaatttctccaccattgatttctctaattgtactgtgtatagattatgatttcgttgaataatcttagtgcttgatgtgtttgataagatttatatgattcatgtgccaattttgatgaacag

upper sequence: GLYMA09G33920.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv02s0012g01810.t01 (Vitis vinifera), 5'ss of exon 1
CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttctt--ttcttttctttttcttcactccactatgttaacgatag---------------------------------------------
|||| | || ||| |||| ||||||||||| ||||||||||| || || |||||||| |||||||| || || ||||| || || ||||| ||||| || |||||  ||| ||||  |||| | |  ||  || |   |  | | |||  | |                                               
CTTCGTGGTTTGGAACCCTCCCGAGTTCGCAAGAGACCTTTTACCGAAGTACTTCAAGCACAACAATTTTTCGAGCTTTGTGAGGCAGTTGAACACATATgtatgaatttatcttgcttctctccagttcattaaagtctttcttttattgcttttactttaatcattcaatggccgctatggatgttaatgacgccttt