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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAGAGGAACAACACTTGTTATTACTCTTTCATTGGTGCTTTCGACACTTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatgtttttttattttttttttagttttcgaaagtttttcccatttccgatttttggatgagcaggaattttttttccttgatgttttttcttt...

Basic information

species Glycine max
transcript GLYMA09G33160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734891|gb|BM528445.1|BM528445
EST:     TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
EST: gi|19053956|gb|BM732623.1|BM732623
EST:     TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
EST: gi|15288236|gb|BI472127.1|BI472127
EST:     TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
EST: gi|308098228|gb|HO759969.1|HO759969
EST:     TAGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
EST: gi|193397321|gb|FK363355.1|FK363355
EST:     TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTA
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTA
EST: gi|120534087|gb|EH262220.1|EH262220
EST:     TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCG                         GAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG
genomic: TTGTGTCCTTCTCCACTTTCACACATGCCTTCTCTTCTTCTGCGTTTCCGgtaagttatg ... ctatgtgcagGAACTGAATCCTATAAAACCTAGGCACTCACGTCTTCTCAGGAGTGCCGTG