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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTCTTCCTCTGTGCCCTAGCTTCTCTTCCGCCGCTGTCAACGACCGTCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcacattcttctctctgatctagtgctgctttaggcgtcacttactgcatcgccaccctcgcagtgtgattgagggttttacttttggattcgtc...

Basic information

species Glycine max
transcript GLYMA09G28650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193588183|gb|FK541804.1|FK541804
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGACCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATACAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|209711120|gb|BW676339.1|BW676339
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|193334002|gb|FK299164.1|FK299164
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAAATCCAGGAAATCATGCA
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAA-TCCAGGAAATCATGCA
EST: gi|208072543|gb|GD869817.1|GD869817
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|209700495|gb|BW660895.1|BW660895
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGTGAATTTAG                 
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTC---------AGgtaactcaca ... gt
EST: gi|209722479|gb|BW682829.1|BW682829
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|213618229|gb|DB972999.1|DB972999
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|209725416|gb|BW658278.1|BW658278
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGTGAATTTAG                 
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTC---------AGgtaactcaca ... gt
EST: gi|193400183|gb|FK365738.1|FK365738
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCCTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|193682216|gb|FK622950.1|FK622950
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|192296930|gb|FG991941.1|FG991941
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
EST: gi|193713385|gb|FK654020.1|FK654020
EST:     TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAG                         CTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC
genomic: TCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcaca ... gtgaatttagCTCTTGCGTGCGAAAATTCTCGGAATATTTTGAATCCAGGAAATCATGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTATTCTTCCTCTGTGCCCTAGCTTCTCTTCCGCCGCTGTCAACGACCGTCTCCCTTGCCGCTTCCGGCACCGAACGAACAGTCTCCGGCCAACTTCAGgtaactcacattcttctctctgatctagtgctgctttaggcgtcacttactgcatcgccaccctcgcagtgtgattgagggttttacttttggattcgtc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctc