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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATCTCGGCTTTGAAGGGGATTGTGTCGCCAGGTTTCTGGGTCGCTTCTCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctcaattcactgacttttttttttgtgtttttgaattagttgttttgttgattttgagttgttgggtgttgaaattcggttaatttgatgagt...

Basic information

species Glycine max
transcript GLYMA09G26610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306335|gb|FG995115.1|FG995115
EST:     TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC                         CTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... attttttaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
EST: gi|151400320|gb|EV270134.1|EV270134
EST:     TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC                         CTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... attttttaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
EST: gi|120532800|gb|EH260933.1|EH260933
EST:     TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC                         CTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... attttttaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
EST: gi|14259951|gb|BG882859.1|BG882859
EST:     TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCAC                         ---A-------TGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA
genomic: TCCTTTCAGCCCCTTAGGGAAAATCCGTTATTTGGGCCCTCTTCATCCACgtaagagctc ... attttttaagCTTAACAAAGATGGGAGCACTTCGGTGGGATGATGTTGTGAATCATCATCA