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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCTCCATCAACTGGTTGAATCCGCCGCCGCCCGCTTAGTCGCCGCCGGAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttttctcaaaccctaatttcctaatcacgtgattcatggatgaatcaccacgtcattaggaccatacatggttttgaagtgcgattccaaccg...

Basic information

species Glycine max
transcript GLYMA09G25470.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25470.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g58710.1 (Oryza sativa), 5'ss of exon 1
CCGCCTCCATCAACTGGTTGAATCCGCCGCCGCCCGCTTAGTCGCC---GCCGGAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttttctcaaaccctaatttcctaatcacgtgattcatggatgaatcaccacgtcattaggaccatacatggttttgaagtgcgattccaaccg
    ||| |    || || ||  |||| ||||| ||| | | ||||   || ||  |    |||||| ||||| |||| ||| |||||||||| |||||||||||||  |     ||| |    ||  |  | ||  |  | |     || || ||| |  |    |    |   |  ||||| |   |||   || ||    
---GCTCGACGCGCTCGTCGACGCCGCGGCCGCGCGCCTCGCCGCCGATGCGGGCGTGCTCCCCGGCCACGTCGTCGCGCTCGCCTTCCCCAACACCGTCGAGgtaaagcaccagtcacag---aagctgttgatatcacggt-----gacga-tcatcgagctgctgatgctg-atctggttcttgtgtgtttttgcag---

upper sequence: GLYMA09G25470.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G48990.1 (Arabidopsis thaliana), 5'ss of exon 1
CCGCCTCCATCAACTGGTTGAATCCGCCGCCGCCCGCTTAGTCGCCG---CCGGAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattc------ttttctcaaaccctaattt------------cctaatcacgtgattcatg--gatgaatcaccacgtcattaggacc-atacatggttttgaagtgcgattccaaccg-------------------------------------------------------------------------
    || ||  | ||  | |||  ||||||  | ||| | ||| |||   | ||||||||||||||||| ||| | |||||||||||||| || |||||||||||| ||       |||||  | |     ||||             ||  |   ||  | | ||  || |||||||   |  |  || |   ||  ||   | | ||  ||  |   ||  |                                                                         
---TCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGACGCTGGAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGgtattttaagaggttttcatatatttcgatttaaaagcttcgtttctggttttgttttgcgtgctgaagaatcacatgggaagcagaatttatgaatatctgtaaatcgct-tcttaattgagaaattttgatttccggattcagatgatttttttggatgaatttggttttgattttttttttttgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617712|gb|DB967579.1|DB967579
EST:     GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG                         TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST: gi|19347069|gb|BM891949.1|BM891949
EST:     GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG                         TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST: gi|209708569|gb|BW668182.1|BW668182
EST:     GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG                         TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST: gi|37996236|gb|CF807825.1|CF807825
EST:     GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG                         TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG