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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAAGTTGATGCTATGGAGTTAGACCTTAGTTCAATGACATCTGTTCGAAAATTTGCATCAGAGTTCATTTCTTCTAGTCTTCCACTAAACATTTTGATgtaagagtacaaaggctacattgccaaaaaaattcatagatgtgtttgtgttcaatacagttgactgttactctctctgcagataaatcttaattctgttcattcaaggaaacaatggagtagtaatggtttttggtttatttgttgcaatttaag

Basic information

species Glycine max
transcript GLYMA09G25070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193406829|gb|FK372288.1|FK372288
EST:     AAATTTGCATCAGAGTTCATTTCTTCTAGTCTTCCACTAAACATTTTGAT                         AAACAATGCAGGAATTTTTGGAAACCCCCTTTCATGCT
genomic: AAATTTGCATCAGAGTTCATTTCTTCTAGTCTTCCACTAAACATTTTGATgtaagagtac ... gcaatttaagAAACAATGCAGGAATTTTTGGAA-CCCC-TTTCATGCT
EST: gi|14990475|gb|BI316148.1|BI316148
EST:     CCACTAAACATTTTGAT                         AAACAATGCAGGAATTTTTGGAACCCCTTTCATGCTGTCTGAAGATAACAT
genomic: CCACTAAACATTTTGATgtaagagtac ... gcaatttaagAAACAATGCAGGAATTTTTGGAACCCCTTTCATGCTGTCTGAAGATAACAT
EST: gi|207817435|gb|GD789368.1|GD789368
EST:     AAATTTGCATCAGAGTTCATTTCTTCTAGTCTTCCACTAAACATTTTGAT                         AAACAATGCAGGAATTTTTGGAACCCCTTTCATGCTGTCTGAAGATAACAT
genomic: AAATTTGCATCAGAGTTCATTTCTTCTAGTCTTCCACTAAACATTTTGATgtaagagtac ... gcaatttaagAAACAATGCAGGAATTTTTGGAACCCCTTTCATGCTGTCTGAAGATAACAT