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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTTGgtaatcttctttttgtagaatttgggaaag

Basic information

species Glycine max
transcript GLYMA09G24800.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g03970.t01 (Vitis vinifera), 5'ss of exon 3
---GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTTGgtaatcttctttttgtagaatttgggaaag---------------------------------------------
   ||||||| ||||| |||||| || |||||||||||||||||  | || || | ||||||||| || ||||| || || ||||||||||||||| ||||| |||  ||   |     |  |||    |                                                
GTTGGAGCTCCTGCTCGTGTTGGATTAGTTGCCCCAATTGATGTCATTGTCCCACCTGGCAACACGGGACTTGACCCTTCACAGACCTCTTTCTTCCAGgtttgtagactcagtcaataatgattccctattttcctttttgttcgtcgcagttgtttctcatgctactacttttcag

upper sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 2
----GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTTGgtaatcttctttttgtagaatttgggaaag--------------------------------------------------------------------------
    ||||||| ||| | ||| ||| | |||||||| ||||||||  | || |||| ||||||||| || || |||||||||||||| ||||||||| ||||  |  || |   ||  | |     ||| | |                                                                           
GGTCGGAGCTCCTGCGCGTGTGGGTCTTGTTGCCCCCATTGATGTGATTGTACCTCCTGGCAACACTGGTCTGGATCCCTCTCAGACTTCTTTCTTCCAGgtgag--atttaaattacgcacttgatggcagatatcatgttttcacagtgacatctgatattttgtccactttccgtttctgacacctgatgcgtgttgattatcag

upper sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S38_196V6.1 (Physcomitrella patens), 5'ss of exon 2
----GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTT-Ggtaatcttctttttgtagaatttgggaaag-------------------------------------------------------------------------------------------------------------------------------
    ||||| | ||||| ||| |||||||||||||| || ||||| || ||||| |  || ||||| || || |||||||| ||||| ||||||||| ||||  |||  ||    | | |||   | |  ||| |                                                                                                                               
GGTCGGAGCACCTGCTCGTGTGGGTTTGGTTGCCCCCATCGATGTGGTTGTTCCCCCCGGTAACACTGGTCTGGATCCCTCGCAGACATCTTTCTTCCAGgtaaggtcttcggtatatggtatgttctatgaatgagattccagtcagtcaatttagcttatcgcagtgggcaagtgtcctttttctgatgtcgttctttatggcagttatgaaacgctgttaactgaaggtttctgacgaatagaatgctgaactctccag

upper sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ13245 (Selaginella moellendorffii), 5'ss of exon 3
---GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTT-Ggtaatcttctttttgtagaatttgggaaag------------------------
   ||||| | ||||| ||| ||  | |||||||| || || ||   | |||||| ||| | ||| |||||||||||||| ||||| ||||||||| ||||| |    |||| ||||| |    ||||     |                        
GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTAACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccctctttttttttttttttttgtttctgtggttcatacttgcaaacttccag

upper sequence: GLYMA09G24800.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ24514 (Selaginella moellendorffii), 5'ss of exon 3
---GGAGCTCTTGCTCATGTTGGTTTGGTTGCCCCAATTGATGTTGTCGTTCCTCTTGGCAACACAGGGCTTGATCCCTCTCAGACCTCTTTCTTCTAGGTT-------Ggtaatcttctttttgtagaatttgggaaag-----------
   ||||| | ||||| ||| ||  | |||||||| || || ||   | |||||| ||| | ||| |||||||||||||| ||||| ||||||||| |||||        |   |  ||| ||| |    ||       |           
GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaaagaggtgctctgtttctgtggttcatacttgcaaacttccag