1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAACAAACGCTCCAAACTCAGCCTCAGAGGCCTTCAGATCAGTGCAAGGAAATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctttttgcatcggttgagtttttaagggataattcttgtgaacctttttgtgttttggtgtttag
species | Glycine max |
transcript | GLYMA09G23150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAG ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|209711150|gb|BW683804.1|BW683804
genomic: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAG ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|42723015|gb|CK768914.1|CK768914
genomic: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAG ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|7685590|gb|AW756238.1|AW756238
genomic: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAG ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAACEST: gi|254335256|gb|GR846753.1|GR846753
genomic: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
EST: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAG ATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
genomic: AATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctt ... tggtgtttagATTGAGGAGCATTTGCAACATTTACGTGGGGTGCAGCCATTTGGTGAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAAACGCTCCAAACTCAGCCTCAGAGGCCTTCAGATCAGTGCAAGGAAATCAGCCCCTTCTGAAGTCATCCCCGTGTCACCCGAAGATGATCCAAAGgttcgtgctttttgcatcggttgagtttttaagggataattcttgtgaacctttttgtgttttggtgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG