Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGgtgctttttctttctttcaaatctcaattcaatagtaatgctaattggtaataataacattaataccaatgataacaacactaaaagggacttgtattag...

Basic information

species Glycine max
transcript GLYMA09G08270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G047414_T01 (Zea mays), 5'ss of exon 1
ACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGgt---gctttttctttctttcaaatctcaattcaatagtaatgctaattggtaataataacattaataccaatgataacaacactaaaagggacttgtattag-
 || ||||||||||| ||||| |||||||| || || || || |||||||| || |||||||| |||||||||   |   | |  || ||||   ||  |||   |  ||| || | | |   | || |        |   |  ||||| |  |||       |  |    ||  |  | || ||  |||   |       |  
GCTCAATGTGCCACCCGGGCGCTGGCTCACGGCACCCTTCAACCTCACCAGCCACATGACGCTGTTTCTTGCCGAGGGCGCGGAAATCCTTGGCATTACGgtaaagagtttactgtttctatgaacttatccgtggggctttagtaattag--atagatcttctcgtgtgcatttt--ctacgctccaagcctccaaccaaaag

upper sequence: GLYMA09G08270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G135763_T01 (Zea mays), 5'ss of exon 1
ACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGgtg---ctttttctttctttcaaatctcaattcaatagtaatgctaattggtaataataacattaataccaatgataacaacactaaaagggacttgtattag
 || |  |||||| | |||||||||||||| |||||||| || |||||||| || ||||| ||||| || ||    |   |||  || || |   ||||||||   | ||  ||    ||   |||    ||   | |  |       || |        | ||| |     ||    |     |  |||   ||  | |   
GCTCACCGTGCCAGCCGGGCGGTGGCTCACCGCGCCGTTCAACCTCACCAGCCACATGACTCTCTTCCTCGCTGCTGGCGCTGAGATCCTAGGGATTCAGgtgagacattagctgctatttgcatcagctttgtttggctaaagacgctgctctcgg-gtctttagtcaatctggattcgtttgtgcaagtatctactctg--

upper sequence: GLYMA09G08270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G42950.1 (Arabidopsis thaliana), 5'ss of exon 1
ACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGgtgctttttctttc--tttcaaatctcaattcaatagt--aatgctaattggtaataataacattaa---taccaatgataacaacactaaaagggacttgtattag-------------------
||||||||| || ||||| || ||||||||||| |||||||||||||| ||| ||||||| || || ||  |     |  |||  || |||||  |||||||  | |||| |    ||| ||||    ||  |   ||          ||     |  | |     |   |   | |     ||  | | ||      |||  ||                     
ACTTAATGTTCCTCCTGGTCGTTGGCTCACTGCTCCGTTTAATCTCACTAGTTATATGACTCTTTTCCTCTCTGAGAACGCTGAGATTCTTGCTCTTCAGgttttgtttcctctgatttgaaattgtgatctatgtgtttgggatctgtttagggttttgatgcagagtttgttatttggttcactattgaattaagattgggttttgatgttgaaacgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721330|gb|BW665796.1|BW665796
EST:     GTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAG                         GATGAAAAGTATTGGCCATTGATGCCCGCATTGCCTTCATATGGGTATGGA
genomic: GTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGgtgctttttc ... tgattaacagGATGAAAAGTATTGGCCATTGATGCCCGCATTGCCTTCATATGGGTATGGA