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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCGGTTTGGGCTCTTCCAACATTGGCTCTTACATTAATGGCCAGTGGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttctcataattaatttttttcttcaatttttgttatttatttctttattttgtgaggctttcttgtcttttttgttttcatgtgtatgtgattattggttattggtgatttgaaaattag

Basic information

species Glycine max
transcript GLYMA09G08150.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327078|gb|GR836687.1|GR836687
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: gi|151397251|gb|EV267124.1|EV267124
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: gi|151408630|gb|EV278438.1|EV278438
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: gi|16347961|gb|BI973556.1|BI973556
EST:     TTCTGTCACGTTCTCGTTAATCCATATCTAACAATCAT                         AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: TTCTGTCAC-TTCT-GTTAATCC-T-TCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
EST: gi|254331835|gb|GR846145.1|GR846145
EST:     GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAG                         AGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG
genomic: GGAAAGCCACTGGTTCTTCTGTCACTTCTGTTAATCCTTCTAACAATCAGgttcaccttc ... tgaaaattagAGTATAGCTCAAGTGACCGAAGCAACTTTGCAAGATTTTGAGGAGGGGTTG