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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCCGTGGCTGTTAAGCTCTTGAACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGgtatgtatgctcctttgctttctttctcgtaactatcatggtcctatctatttcgatcgtgcagcatatttgtggtcttaatcaaaaatatgcagacatg...

Basic information

species Glycine max
transcript GLYMA09G08110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08110.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 1
GGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCCGTGGCTGTTAAGCTCTTGAACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGgtatgt--atgctcctttgctttctttctcgtaactatcatggtcctatctatttcgatcgtgcagcatatttgtggtcttaatcaaaaatatgcagacatg
||| |||||||||||||||||  | | |||  | |||||||| ||||||||||| ||||| ||| | ||||| |||| |||||||||   ||| ||| ||||  ||  | | || ||   ||| |||  |   | |   ||  ||||   |   | | |  || |      || |   |||  |   |    |||||     
GGGCTTCATTGATGACAAGCTCCGCCCTGGTTTGAAGGCTCAGCCCGTGGCTGTCAAGCTTTTGGATTTGGAAGGCTTGCAGGGCCATCGAGAATGGCTGgtgagttcaagttcgttctttttattttccagtattga-attttccttaatgggttggtgatgaaatggtgttttttccttcctttgat---tgcag-----