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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGGACAGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctctctttctctctaaattttcttctttctttttcttttttttttaaattctactcactaaagtttatttatttataattttttttttttgcag

Basic information

species Glycine max
transcript GLYMA09G07970.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07970.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01500.t01 (Vitis vinifera), 5'ss of exon 1
GCAATGGACAGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctctctttctctctaaattttcttctttctttttcttttttttttaaattctactcactaaagtttatttatttataattttttttttttgcag----
|| |||||  |||||   || ||||| || || || || |||||||||||| |||| || ||||| ||| | || |||||||||||||||||||||||||||||   |   ||||| | |   ||||  ||||    |||   ||  |   ||||| |       | |    |   ||  ||| |    ||  ||||       
GCGATGGATGGTGGACCGCAGTACAATCCTCGAACTGTAGAAGAGGTTTTCAGGGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGgttagatttcgtttctgtttg--tttttctcttgaccttttggttgctgagaaattgtgg--gagagacaaaaaaaatggatagtggagttgatttgagacttc

upper sequence: GLYMA09G07970.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g01600.t01 (Vitis vinifera), 5'ss of exon 1
GCAATGGACAGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctctctttctctctaaattttcttctttctttttcttttttttttaaattctactcactaaagtttattt---atttataattttttttttttgcag
|| |||||| | || | | ||||||| |||||||| || |||||||||||| | || ||||| |||||| | |||||||||||||||||||| || || ||||    ||| ||  | | ||  ||||  | |   |||   |||   ||| || || |  |    |  |||| |||    | | |   |||||  | ||||||
GCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgtt---ttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgtttttggaatggtttgttttgagtgtttttgtttttggtcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191570|gb|HO039049.1|HO039049
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|151412383|gb|EV282195.1|EV282195
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|192323928|gb|FK018649.1|FK018649
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|192299703|gb|FG990027.1|FG990027
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|12689413|gb|BG155810.1|BG155810
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|151401139|gb|EV270953.1|EV270953
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGACCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
EST: gi|151411128|gb|EV280939.1|EV280939
EST:     CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTG                         ATGTTGAGGAATTTTACCAGCAGTGTGATCCTG
genomic: CCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctct ... ttttttgcagATGTTGAGGAATTTTACCAGCAGTGTGATCCTG