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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTGCCGTTCACTCCTCCTTCCTCACCTCCGGCTATGTCCTCACCGCTACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaaaacgaaaaacaccctttttcccccctttattcttctacttctttttttccttcaattctttcttgttggtttttttcgatgtttgttgatgcactgcgttttgtatgcag

Basic information

species Glycine max
transcript GLYMA09G06650.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322515|gb|FK014636.1|FK014636
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|26057707|gb|CA800621.1|CA800621
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|6454761|gb|AW185444.1|AW185444
EST:     ACAGGCTCCCCAGGCCCTTTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: ACAGG-TCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|298188023|gb|HO031980.1|HO031980
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|27424635|gb|CA936155.1|CA936155
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATTTTTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|298182212|gb|HO026387.1|HO026387
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|209726445|gb|BW662810.1|BW662810
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|298185759|gb|HO028070.1|HO028070
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|254325977|gb|GR838858.1|GR838858
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|192296179|gb|FG991549.1|FG991549
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG
EST: gi|192327541|gb|FK020616.1|FK020616
EST:     TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATG                         ACGAGGTATCCGTTGATCATTGGAACGAGTTGAACGATGAGTACGCGTTCG
genomic: TACAGGTCCCCAGGCCCTCTCCGACAATGCGTTTTCTGACCCATCCAATGgtaataaaaa ... ttgtatgcagACGAGGTATCCGTTGATCATTGGAACGAGCTGAACGATGAGTACGCGTTCG