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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCCTCTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctctctctctctagggttttttctctcaactattcctttcaacatgcgctatgatactcattactactttattgtaatctgattcag

Basic information

species Glycine max
transcript GLYMA09G05030.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294587|gb|FG986436.1|FG986436
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|17963766|gb|BM270511.1|BM270511
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21285536|gb|BQ473407.1|BQ473407
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|19268657|gb|BM884913.1|BM884913
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21594902|gb|BQ610304.1|BQ610304
EST:     GCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|208201104|gb|GD996587.1|GD996587
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31455768|gb|CD397796.1|CD397796
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATTAACACTCAACCTAAGATGCAG
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTA-TAACACTCAACCTAAGATGCAG
EST: gi|27424826|gb|CA936346.1|CA936346
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31468437|gb|CD410465.1|CD410465
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31464224|gb|CD406252.1|CD406252
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTTAAGATGCAG
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACC-TAAGATGCAG
EST: gi|33390218|gb|CA853425.1|CA853425
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|6848508|gb|AW350798.1|AW350798
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|213593372|gb|DB973565.1|DB973565
EST:     CGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31461560|gb|CD403588.1|CD403588
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21993850|gb|BQ785378.1|BQ785378
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21285606|gb|BQ473477.1|BQ473477
EST:     CACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|19268788|gb|BM885044.1|BM885044
EST:     ATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31475564|gb|CD417592.1|CD417592
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|298169885|gb|HO018509.1|HO018509
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|8826049|gb|BE209779.1|BE209779
EST:     TCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31461117|gb|CD403145.1|CD403145
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31473593|gb|CD415606.1|CD415606
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|33387622|gb|CA850829.1|CA850829
EST:     CCGCATTAGCACTCGTNCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGC-TTATAACACTCAACCTAAGATGCAGA
genomic: CCGCATTAGCACTCGT-CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31467647|gb|CD409675.1|CD409675
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|213599923|gb|DB966439.1|DB966439
EST:     CGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|208337090|gb|GE137216.1|GE137216
EST:     CTCTACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|151397980|gb|EV267853.1|EV267853
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|7028439|gb|AW458222.1|AW458222
EST:     GTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31466130|gb|CD408158.1|CD408158
EST:     CGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|22524094|gb|BU082905.1|BU082905
EST:     GTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|13790461|gb|BG653052.1|BG653052
EST:     CGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|193564320|gb|FK518749.1|FK518749
EST:     TCTACCGTCATTTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TCTACCG-CA-TTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31305801|gb|CD391004.1|CD391004
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31308175|gb|CD393378.1|CD393378
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|33390294|gb|CA853501.1|CA853501
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31468520|gb|CD410548.1|CD410548
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|209723019|gb|BW668863.1|BW668863
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31306953|gb|CD392156.1|CD392156
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|24205543|gb|BU964796.1|BU964796
EST:     TCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|6667090|gb|AW278549.1|AW278549
EST:     AGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: AGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|192300428|gb|FG991470.1|FG991470
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|7030407|gb|AW460190.1|AW460190
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAATATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|261497063|gb|GT185238.1|GT185238
EST:     CTACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|38193800|gb|CF923006.1|CF923006
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31475433|gb|CD417461.1|CD417461
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|33389730|gb|CA852937.1|CA852937
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGNCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|192303551|gb|FG994501.1|FG994501
EST:     TACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31474611|gb|CD416639.1|CD416639
EST:     GCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31308443|gb|CD393646.1|CD393646
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31462814|gb|CD404842.1|CD404842
EST:     GTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31310128|gb|CD395331.1|CD395331
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|193396974|gb|FK361972.1|FK361972
EST:     ACCGCATTAGCGCTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|254329308|gb|GR833680.1|GR833680
EST:     TAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|14990883|gb|BI316556.1|BI316556
EST:     GTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21994124|gb|BQ785652.1|BQ785652
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31459190|gb|CD401218.1|CD401218
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|21602729|gb|BQ613060.1|BQ613060
EST:     ATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31457555|gb|CD399583.1|CD399583
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31309335|gb|CD394538.1|CD394538
EST:     CGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|213589554|gb|DB965798.1|DB965798
EST:     CGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|209699505|gb|BW682998.1|BW682998
EST:     CATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31307082|gb|CD392285.1|CD392285
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|13482274|gb|BG511617.1|BG511617
EST:     CGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31461748|gb|CD403776.1|CD403776
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|18039235|gb|BM307529.1|BM307529
EST:     ACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31456458|gb|CD398486.1|CD398486
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|192311479|gb|FK005210.1|FK005210
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31466102|gb|CD408130.1|CD408130
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31464096|gb|CD406124.1|CD406124
EST:     GTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: GTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|38193591|gb|CF922797.1|CF922797
EST:     CTCCTCTACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCCTCTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|192303550|gb|FG994500.1|FG994500
EST:     TACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: TACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|192294429|gb|FG987358.1|FG987358
EST:     ACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: ACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|298171558|gb|HO016590.1|HO016590
EST:     CTCTACCGCATTAGCACTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|31468853|gb|CD410881.1|CD410881
EST:     CTCGTCTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTCGTCTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
EST: gi|15337596|gb|BI498252.1|BI498252
EST:     CTTTGGTTCTG                         GTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA
genomic: CTTTGGTTCTGgtacgttctc ... tctgattcagGTTTATAGATCTCTGTGAAGTCGCTTTATAACACTCAACCTAAGATGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCTCCTCTACCGCATTAGCACTCGTCTTTGGTTCTGgtacgttctctctctctctagggttttttctctcaactattcctttcaacatgcgctatgatactcattactactttattgtaatctgattcag

-  CTCCTC