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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCATGCCGGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGgtaactacatctggtaatttctcatataaatttttgttgggtagctactttgaattttccatcatcatgttttctatatag

Basic information

species Glycine max
transcript GLYMA09G04270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 6
GCTCATGCCGGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGgta-actacatctggtaatttctcata------taaatttttgttgggta------gctactttgaattttccatcatca--tgttttctatatag
||| ||||| ||||||||||||||||||   || || || ||||| ||||| || ||||| ||||| ||||||||||| ||||| |||||||||  ||||||  ||     ||     || |||| |       | | |||| || |  |        || | || || ||  ||  ||   || ||| |    ||
GCTGATGCCTGGATTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTTCTTATCAATCCTCGGAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgttcacctttgctctagcttcctcaaagtattccagacttttttttgacatagttgaataatctgtatgttgaatggtctattgatttttcaccag

upper sequence: GLYMA09G04270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCATGCCGGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGgtaactacatctggtaatttctcatataaatttttgttgggtagctactttgaattttc-catcatcatgttttctatatag----------------
||| ||||| |||||||||||||| || || ||| | |||||||||||| | ||||||||  | || |||||||||||||||||||| ||||||  ||| || |     |    | ||   |   | | | |  |  |   |  |||    |  | | |   |  |||| | ||  |  ||                 
GCTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTAGCTCAGAGGGTTTTGATAAATCCAAGAAAGATTGACTATCATACTGGAGTCTTTGCAAGCAAAgtgagcctgttatatcatgcattgcaaatactgcttctctttctctatacagtgtgtccatgtattcatctgttaaacttaaatctattcttattcag

upper sequence: GLYMA09G04270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCATGCCGGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGgtaa----ctacatctggtaatttctca--tataaatttttgttgggtagctactttg-aattttccatcatcatgttttctatatag
 || ||||| |||||||||||||| || || ||| ||||||| |||||||| |||||| |  | || |||||||| ||||||||||| ||||||  ||| ||||     |   |||  |   || | |  || | || ||  ||    ||    |||   | |||   |  | |    |||| || ||
ACTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTACCATACTGGAGTATTTGCAAGCAAAgtaagcctttttgtctcatgcattttaaattagatatcttccttacacagtgggtttacgaattttttttgttaacgcttctttacag