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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGAGAAGACAAGTGACAAGAGTGTGAACTGCAAAGGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctaccacaattcaatcttaacttcatcacattaacattttcttcgattttcactttcctctcacaaactcacttttcctttccattttttttttttgcag

Basic information

species Glycine max
transcript GLYMA09G03470.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532704|gb|EH260837.1|EH260837
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192312501|gb|FK004987.1|FK004987
EST:     GGGCTTCTCCGGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298169145|gb|HO020505.1|HO020505
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|151396909|gb|EV266782.1|EV266782
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|207780368|gb|GD752177.1|GD752177
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAAGGGAAACATACGGCGTCGTTTACA
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGA-GGGAA-CATACGGCGTCGTTTACA
EST: gi|298190796|gb|HO032917.1|HO032917
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192295604|gb|FG988178.1|FG988178
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|6073117|gb|AW102504.1|AW102504
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298178270|gb|HO024005.1|HO024005
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|298182098|gb|HO026273.1|HO026273
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|193698034|gb|FK640645.1|FK640645
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192330928|gb|FK023101.1|FK023101
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|9204181|gb|BE330405.1|BE330405
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|213591734|gb|DB973355.1|DB973355
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|24136151|gb|BU926661.1|BU926661
EST:     GGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|151394972|gb|EV264843.1|EV264843
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|13562876|gb|BG551096.1|BG551096
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|151409597|gb|EV279405.1|EV279405
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|1445055|gb|AA001580.1|AA001580
EST:     GCTTCTCCAGCCTAGTTTGTTACTCAGAATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GCTTCTCCAGCCTAGTTTGTT-CTCAG-ATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192309058|gb|FK001834.1|FK001834
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|192312486|gb|FK004986.1|FK004986
EST:     GGGCTTCTCCGGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
EST: gi|15813934|gb|BI786209.1|BI786209
EST:     GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAG                         TACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG
genomic: GGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctacca ... ttttttgcagTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGAGAAGACAAGTGACAAGAGTGTGAACTGCAAAGGGCTTCTCCAGCCTAGTTTGTTCTCAGATCTTCTTCTTCCATGGACCAGgttcctaccacaattcaatcttaacttcatcacattaacattttcttcgattttcactttcctctcacaaactcacttttcctttccattttttttttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA