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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACGTCGCCGGCCTCGACAGCTTCATCAGGACCGTCAATCTCGCCTCCTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcctccttcgatcttccacttttgctcattcggattgcttgatttacttccatcgaacttgtggtctgacttttttgtgtttgttgagct...

Basic information

species Glycine max
transcript GLYMA09G02490.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 1
TTCAACGTCGCCGGCCTCGACAGCTTCATCAGGACCGTCAATCTCGCCTCCTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcctccttcgatcttccacttttgctcattcggattgcttgatttacttccatcgaacttgtggtctgacttttttgtgtttgttgagct---
|||   | || |  |   ||  |||||||   | |||      |||||  ||||||||||||||||||||||||| | ||||||||||| ||||| |||||| ||| |   ||     |   | ||      ||   |    |  |  | |||   |  ||      | || |   |||   ||  || |   | || |    
TTCGCGGCCGACTCCGCGGAGCGCTTCATGGCGGCCGCGGGCGTCGCCGGCTGCGGCCTCTCCTACGCCGTCGTCTCCATCATGGGACCCCAGAGCAGCGgtacgtacggacccatcccatccctcgcgccatgtcgagatcgcctcatcgatcggccgccgcgcgccatgcgtcatga---ttgggtatcgatcgatccctc

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G052619_T01 (Zea mays), 5'ss of exon 1
TTCAACGTCGCCGGCCTCGACAGCTTCATCAGGACCGTCAATCTCGCCTCCTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcctccttcgatcttccacttttgctcattcggattgcttgatttact-tccatcgaacttgtggtctgacttttttgtgtttgttgagct
|||   | ||  ||    ||  | |||||   | ||| |    |||||   ||||| |||||||||||||||||| | |||||||| || ||||| |||||| || |  | | | |  ||      || |      | |||   |  |  | |  ||  |||||| | |  |  |  ||  ||  |    |    ||| | 
TTCGCGGCCGAGGGGGCGGAGCGGTTCATGGCGGCCGCCGGCGTCGCCGGGTGCGGGCTCTCCTACGCCGTCGTCTCCATCATGGGGCCACAGAGCAGCGgtacgctt-tgcttgcaccgcctccgcagtcagcaccgttcccgtcccgcgctcgacggtccatccaccaaggcggttgggttggtccgatactctgatcc

upper sequence: GLYMA09G02490.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 1
TTCAACGTCGCCGGCCTCGACAGCTTCATCAGGACCGTCAATCTCGCCTCCTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcattcct--ccttcgatcttccacttttgctcattcggattgcttgatttacttccatcgaacttgtggtctgacttttttgtgtttgttgagct
|||   | ||| |     ||  | |||||     |||      |||||   ||||| |||||||||||||||||| | |||||||| || ||||| ||||||   | | |  ||  |  | |  |  || |  |  |   | || ||  || ||    |   |   || |        ||| ||   | || ||| |  |  
TTCGCGGCCGCGGCGGCGGAGCGATTCATGGCAGCCGCGGGAGTCGCCGGATGCGGGCTCTCCTACGCCGTCGTCTCCATCATGGGGCCACAGAGCAGCGgtatatgcttcgcttgcacttgcaccgcctccgtccccgttccgcatcactcgacgaccaatccatgatccatcacggtgaattgggt-tggttgcttggt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023193|gb|BM094227.1|BM094227
EST:     CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCG                         GGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG
genomic: CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcat ... ttttgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG
EST: gi|209698106|gb|BW661049.1|BW661049
EST:     CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCG                         GGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG
genomic: CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcat ... ttttgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGATGG
EST: gi|193651516|gb|FK596857.1|FK596857
EST:     CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCG                         GGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGAT
genomic: CTGCGGCCTCTCCTACGCCGTCGTCGCAATCATGGGACCTCAGAGTAGCGgtgcgttcat ... ttttgagcagGGAAGAGCACGTTAATGAATCATCTTTTCCACACAAGTTTCAGGGAGAT