Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTCAACACCGTCCCCCGCCACCGCCACAAACACCCCCCTCCCGACAACTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaacaacttttggagtaactcaatccctcctccaaccaaaatacagtatgtataaactaacttttgtgttgtgttgttgcag

Basic information

species Glycine max
transcript GLYMA09G02160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g52630.1 (Oryza sativa), 5'ss of exon 1
ATCGTCAACACCGTCCCCCGCCACCGCCACAAACACCCCCCTCCCGACAACTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgta-----aacaacttttgga---gtaactcaatccct-cctccaaccaaaatacagtatgtataaa--ctaacttttgtgttgtgttgttgcag-
||||||||   |||||||| | | |||| |   |  || || |||||| | |||||||  ||||||||||||||||||||||||||||| || |||||||||  ||       ||  ||||           ||| ||| ||  || || |  ||  | || | | | ||    | |   ||  | |  | | |||||  
ATCGTCAAGCTCGTCCCCCACAAGCGCCCCCCTCCTCCTCCCCCCGACCAGTACACCCAGGCCCTCCACAAGGCCCTCATGTTCTTCAACGCGCAACGATgtgagtttttttcactcctttcctccctccgtctccatctctgtctgcatcagaagaagaggaggaagaagatttcagaattcagatccggttttgcacg

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G099101_T01 (Zea mays), 5'ss of exon 1
ATCGTCAACACCGTCCCCCGCCACCGCCACAAACACCCCCCTCCCGACAACTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaacaactt--ttggagtaactcaatccctcctccaaccaaaatacagta-tgtataaactaacttttgtgttgtgttgttgcag---------
|||| |||  || ||||| | |  | || |   |  || || |||||| |||||||| |||| || |||||||| |||||||||||| |||||||  |||||  |||   |  |   ||     |  |    |  | || | |   |  |  |    |  | ||       |||  |  ||  | || |           
ATCGCCAAGGCCATCCCCAGGCGGCACCGCCCGCTGCCACCGCCCGACGACTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCCATGCCCAGAGATgtgagtagttagttaagtttcgtcatttttcgcatttcttctagtgatttgtaacggttcaaaagacgggatttaaggcgttcttttacctatagttttg

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G003379_T01 (Zea mays), 5'ss of exon 1
ATCGTCAACACCGTCCCCCGCCACCGCCACAAACACCCCCCTCCCGACAACTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaacaacttttggagtaactcaatccctcctccaaccaaaatacagtatgtataaactaacttttgtgttgtgt-tgttgcag-------------
|||| |||  || ||||| | | || || |   |  || || |||||| |||||||| |||| || |||||||| |||||||||||||||| |||  |||||  |||   |||| |     |       |    ||     |        ||| |    ||  |   |||| |  ||||| |||    |             
ATCGCCAAGGCCATCCCCAGGCGCCACCGCCCGCCGCCGCCGCCCGACGACTACACCGTCGCGCTGCACAAGGCGCTCATGTTCTTCAATGGCCAGAGATgtgagtag-taactctgtttcttctgtggttttgccattg-cgtgggcggagtgttggaaagattgtttttttaatgtgtctgtgatggcgatgcgttagaa

upper sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 1
ATCGTCAACACCGTCCCCCGCCACCGCCACAAACACCCCCCTCCCGACAACTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaacaacttttggagtaactcaatccctc-ctccaaccaaaatacagtatgtataaactaacttttgtgttgtgttgttgcag------------
|||||||| ||||| || || || | ||||   ||| | ||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||   |  || |     |  |||  || ||| ||     |    | |  | |  ||   | |   ||||  ||       | ||             
ATCGTCAAGACCGTGCCGCGTCATCACCACCCTCACGCTCCTCCTGATAACTACACCCTCGCCCTCCACAAGGCCCTTATGTTCTTCAACGCCCAGCGTTgtatgtct-cttctctctctctctctctctctctctcttttttcttttttctttttacattttccattatttgatttccagatctacaatcactgctttcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269386|gb|BM885642.1|BM885642
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209716402|gb|BW657497.1|BW657497
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213587767|gb|DB955629.1|DB955629
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213613887|gb|DB960908.1|DB960908
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213617927|gb|DB957380.1|DB957380
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCC
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCC
EST: gi|209722986|gb|BW668830.1|BW668830
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209715757|gb|BW677251.1|BW677251
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213600725|gb|DB956201.1|DB956201
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209729805|gb|BW658610.1|BW658610
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213610911|gb|DB963213.1|DB963213
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213603305|gb|DB966592.1|DB966592
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213613863|gb|DB960898.1|DB960898
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209704427|gb|BW678397.1|BW678397
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGGAAACTCGGGA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGG-AAACTCGGGA
EST: gi|6666649|gb|AW278108.1|AW278108
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209723229|gb|BW675175.1|BW675175
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213616470|gb|DB965531.1|DB965531
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|37994918|gb|CF806507.1|CF806507
EST:     CTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
genomic: CTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213600483|gb|DB966192.1|DB966192
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213590357|gb|DB970526.1|DB970526
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAAC
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAAC
EST: gi|209719122|gb|BW659399.1|BW659399
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213598741|gb|DB973879.1|DB973879
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209696598|gb|BW666920.1|BW666920
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213589338|gb|DB961671.1|DB961671
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|37995446|gb|CF807035.1|CF807035
EST:     CTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
genomic: CTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209699773|gb|BW652118.1|BW652118
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|213615193|gb|DB965001.1|DB965001
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|10847957|gb|BF070535.1|BF070535
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA
EST: gi|209720762|gb|BW677552.1|BW677552
EST:     CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGAT                         CGGGGAAGTTGCCCAAGCATAACAATGTTTCGTGGAGGGGAAACTCGGGAA
genomic: CTACACCCTCGCCCTCCACAAGGCCCTCATGTTCTTCAATGCCCAACGATgtatgtaaac ... gttgttgcagCGGGGAAGTTGCCCAAGCATAACAATGTTTCATGGAGGGGAAACTCGGGAA