1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGCCTCGCACTCCTGCAGATGTAGTGCGCCAGACCAGAGATCTTCTGCTCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcgtttcattatctttagatctcaaaatttaaatttttatactttttaaatttttttttcgtgagtctgatctcaactaaactctctgctatt...
species | Glycine max |
transcript | GLYMA09G01370.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGCAGEST: gi|254314383|gb|GR831968.1|GR831968
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAG-A--AGgttcatctcg ... ctaacagc
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG ATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAEST: gi|26047458|gb|CA784239.1|CA784239
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcagATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGA
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG ATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAEST: gi|151397719|gb|EV267592.1|EV267592
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcagATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGA
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG ATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAEST: gi|18039695|gb|BM307989.1|BM307989
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcagATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGA
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAGGAGAAG ATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAEST: gi|213608986|gb|DB962912.1|DB962912
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcagATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGA
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG CEST: gi|213608986|gb|DB962912.1|DB962912
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcag-
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG CEST: gi|19268809|gb|BM885065.1|BM885065
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcag-
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG ATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGAEST: gi|207791143|gb|GD761454.1|GD761454
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcagATGTCCGAGCTATTTAAAAATATCAGGGAGCTAAAGTCAATCCTGTATGGA
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG CEST: gi|207791143|gb|GD761454.1|GD761454
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcag-
EST: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAG C
genomic: TCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcg ... ctaacagcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCCTCGCACTCCTGCAGATGTAGTGCGCCAGACCAGAGATCTTCTGCTCTTTGTTGATCGCAGCCCCGAAACCCGCGAAAGCAAACGTGAAGAGAAGgttcatctcgtttcattatctttagatctcaaaatttaaatttttatactttttaaatttttttttcgtgagtctgatctcaactaaactctctgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA