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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag

Basic information

species Glycine max
transcript GLYMA09G00810.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G04460.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgag-attgctttttaattcata-ataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
|||||| ||  |||||||||| ||||||||||||||||||||||| ||||| || |||||||| ||| | ||| | || ||  | ||||||||| | |||||  |  ||  ||| |  || ||  ||||   |  |   ||| |  || | || |||  ||  |       ||       ||  | | ||  |||||  | |||
TGGTGACATTACCATTGGTACTCCTCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCCAATCTCTGGATACCATCTACTAAATGTTACCTATCGgtacgcgttagtttgttcttaatgcataataattctgaaaatcctattgtattcttactcccaaaagaacaaaacaaaatatc-tatgtttaatgttttttcag

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G11910.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgcttttta--attcataataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
|||||| || ||||||||||| || |||||||||||||||||| |||||||||| || ||||||||  | |||||||| ||||| ||||| || ||||| || ||     |||  |  |||  |  || | ||  |    || | |||   |    | |     || |  || ||  ||    |                    
TGGTGAGATCGCCATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCAgtaagcaacatttggactattgttgttagctgtggttgagatacttttgagtagaaaactaattgtgttctatctcttttgcag--------------------

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G62290.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataataaccgtcttatcaat--gcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
|||||| || || |||||||| || || |||||||||||||| |||||||| ||||| ||||||||  | |||||||| |||   |||||||  |||||||| || ||       | ||  || |       |||  |        ||||| |||| | ||     ||| || || |                           
TGGTGAGATTGCTATTGGTACTCCACCGCAGAAGTTCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTTTCTCGgtaagctt-tacaccatttgttagtttttagtttaagagataaaacttattgttttgttccc---gttgttatctag---------------------------

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataata-accgtcttatcaatgcgtttatttttttatccctcagtttggt----------------aacttgttcatggtgttttgcatgttggtgcag
||||||||| |  |||||||| || ||||| | ||||||||| || |||||||| |||||||| ||  ||||||| || |||||||| || || ||||||||||| || | | ||  |    |||    |    | | | ||    | |||||||     |||  |||||                | | |||   ||   |||  ||| |||||||||
TGGTGAAATTGGTATTGGTACTCCCCCTCAAACGTTCACTGTAATCTTTGACACTGGTAGCTCAAACCTGTGGGTTCCATCATCCAAGTGCTATTTCTCGgtgagcttccatatttctgtggaatgtgacaatatgttagtgaacatttttttttccatttcaagttggttggaagcaagagaatcatcatgtgtttgaattttgtcattttggtgcag

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S99_158V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
||| |  || |  || || |||||    ||  ||||||||||| |||| || ||||| ||||| ||||||||||| |||||  | || || ||| |||||||  |   |  ||| |   |   |    ||    ||    |  ||| | || || || |  | ||     |  |||| |     | || | |      ||| 
TGGGGTGATTGAGATCGGGACCCCAAAGCAAGAGTTCACTGTGGTTTTCGATACCGGCAGCTCGAATTTGTGGGTTCCGTCGGCGAAGTGCTACCTCTCGgtatggcagtatttcatcgctacaatttcgctcaattgccg-atttctgttcttctcaccgatttcatggaagtgttaaccacatatttcgtcggctagca-

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ36863 (Selaginella moellendorffii), 5'ss of exon 1
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
 || || || | |||||| | ||| || ||| |||||||||||||||||||||| |||||||| ||| | ||||| || ||    ||||||    | ||||| ||  |       |||||   |      | | ||  || | |  |                                                       
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaagtatttccaggaattccacacgttt-tttcatggattcttgcag------------------------------------------------------

upper sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ27796 (Selaginella moellendorffii), 5'ss of exon 1
TGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCATCCAAATGTTACTTCTCGgtgagattgctttttaattcataataaccgtcttatcaatgcgtttatttttttatccctcagtttggtaacttgttcatggtgttttgcatgttggtgcag
 || || || | |||||| | ||| || ||| |||||||||||||||||||||| |||||||| ||| | ||||| || ||    ||||||    | ||||| ||  |  |     | |   |       | | ||  || | |  |                                                       
CGGCGAGATCGGCATTGGGAGCCCGCCGCAGGAGTTCACTGTGATTTTTGACACTGGTAGCTCGAATCTCTGGGTTCCATCGGGAAAATGTGTTCTGTCGgtaag--tattccaggaattccacacgttttttcatggattcttgcag------------------------------------------------------