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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACTTTCTCCTTCTCAATACCCAAATGCTTTGCTCCCATGGCGTCACCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgcatccttttctgttctttctttctctcaggattttgctatgaaatatcattttccaattatgtggcaatttttaatttgcag

Basic information

species Glycine max
transcript GLYMA09G00580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193421594|gb|FK391853.1|FK391853
EST:     CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTT-CCAAAAGGGTTATAGGGCAATTGAACTCTGG
genomic: CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCA-TTGAACTCTGG
EST: gi|18040851|gb|BM309145.1|BM309145
EST:     CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
genomic: CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
EST: gi|207711712|gb|GD694188.1|GD694188
EST:     CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
genomic: CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
EST: gi|151401621|gb|EV271434.1|EV271434
EST:     CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
genomic: CCCTCATTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
EST: gi|15000262|gb|BI321076.1|BI321076
EST:     CGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
genomic: CGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
EST: gi|193641551|gb|FK592377.1|FK592377
EST:     TTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCT                         GTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT
genomic: TTAATCGCCTTGCTCGTCGATCTTTCTGTCACGCCAACGATTCTgtacgcacgc ... taatttgcagGTTTATCAAGCACTTTTCCAAAAGGGTTATAGGGCATTGAACTCTGGGCCT