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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCTCCTTCAATCCTTCTTCCAACGCTATTAATTACAAAATTAACCTCTCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttctctgatctctcaatacactttctcttatcgcgattcgtgcttgtttcctttgtgatctttctcaccttcgcttgatctattactccacat...

Basic information

species Glycine max
transcript GLYMA08G47790.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412865|gb|EV282677.1|EV282677
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|17153408|gb|BM143341.1|BM143341
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|213587880|gb|DB959704.1|DB959704
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|26059043|gb|CA801957.1|CA801957
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|6481766|gb|AW201037.1|AW201037
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|213591047|gb|DB973788.1|DB973788
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|254315550|gb|GR825359.1|GR825359
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|6133795|gb|AW132188.1|AW132188
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACCGG
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGA-CAG
EST: gi|19453272|gb|BM954682.1|BM954682
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|9439831|gb|BE440344.1|BE440344
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|254346140|gb|GR859753.1|GR859753
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|254336110|gb|GR841435.1|GR841435
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|5126502|gb|AI748238.1|AI748238
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|16106060|gb|BI893800.1|BI893800
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGTTATTGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|15813619|gb|BI785894.1|BI785894
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACATT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|9565717|gb|BE475226.1|BE475226
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|11688467|gb|BF596143.1|BF596143
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|18039782|gb|BM308076.1|BM308076
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|19936998|gb|BQ081103.1|BQ081103
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|41146374|gb|CK606585.1|CK606585
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|192309107|gb|FG999390.1|FG999390
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|16347482|gb|BI973077.1|BI973077
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|209710574|gb|BW676526.1|BW676526
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|209718567|gb|BW662685.1|BW662685
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|254326716|gb|GR832868.1|GR832868
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|16996699|gb|BM086071.1|BM086071
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|17022331|gb|BM093365.1|BM093365
EST:     CTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: CTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|254322565|gb|GR837979.1|GR837979
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT
EST: gi|22540587|gb|BU090430.1|BU090430
EST:     TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCG                         GATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGG
genomic: TCCGCTTCCCTCCGATCCATTCACTCCCTCCCTCTTAAAACCTCCTTGCGgtaagttttc ... cttcattcagGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAGT