Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctgttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt...

Basic information

species Glycine max
transcript GLYMA08G46570.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g30800.2 (Oryza sativa), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacat--tcatcgctcgctctgttttgtttcgttgagga-tatgtcgtagattttcattgtaataatgctgacgtgtgt
   |   |||||||    |||||| | |||||||||||||| ||  |    |||||||||||||| || |||||||||||||||||||| || ||||| |||  ||  ||      || |      | |  | |     |  | | ||||  |   |||||   |   | |        ||    || || | |   ||    
GCGGGCGAGATGAACGCCTTCAGGCTCGCCGGGGACATGACGCACATCATGAGCGTCCTCGTCCTCCTGCTCAAGATCCACACCATCAAGTCTTGCGCTGgtgagtgactgatcagccgactggcgcctgcttaagatgcatttttttttactgtattgagtcctggattggttgccagcagctcaagaaaggtagagtt---

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g30800.1 (Oryza sativa), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacat--tcatcgctcgctctgttttgtttcgttgagga-tatgtcgtagattttcattgtaataatgctgacgtgtgt
   |   |||||||    |||||| | |||||||||||||| ||  |    |||||||||||||| || |||||||||||||||||||| || ||||| |||  ||  ||      || |      | |  | |     |  | | ||||  |   |||||   |   | |        ||    || || | |   ||    
--GGGCGAGATGAACGCCTTCAGGCTCGCCGGGGACATGACGCACATCATGAGCGTCCTCGTCCTCCTGCTCAAGATCCACACCATCAAGTCTTGCGCTGgtgagtgactgatcagccgactggcgcctgcttaagatgcatttttttttactgtattgagtcctggattggttgccagcagctcaagaaaggtagagtt---

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctgttttgtttcgttgaggata--tgtcgtagattttc--attgtaataatgctgacgtgtgt
  |   |||||||| |||||||| ||||| || || ||||| ||  | ||||| || || ||| | |||||||||||||||||||||||||||||||| |||  |||| || | |  |||| ||     | |    | |||    |  | || | | ||| ||  | |||  | || |   |||    | | | |||| | || 
CGATCGAAGATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAGCCAGTGTTCTTGTCTTGCTTCTCAAGATCCACACCATCAAATCCTGCGCTGgtatgtacatttcct--caat-tcgtttctgaaatttagctgaaatgcgattagattaggctaattctcgatgtttgttcgatttgcttgacgttgacatttg-

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctt------tccaatctcaac--attcatcgctcgctctgttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt
 |||  || ||||| |||||||| ||||| ||||||||||||||| ||||||| ||||| ||  | |||||||| || |||||||||||||| ||||| ||||  |||  ||  |      | |||| |   |  ||| ||   ||  | || | | | |  ||     | ||||   ||| |  |   | ||   ||          
AAAGGGAAAATGAACATTTTCAGATTAGCAGGGGACATGACCCATCTGGCCAGTGTCCTGGTTTTGCTTCTCAAAATTCACACCATCAAATCATGCGCAGgtcactactctctctcatttgttcaattttttcttatttatttatcattttgctgtttctttttcctattgtgtctcggatctctacattgatt-cgccac-------

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ33020 (Selaginella moellendorffii), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctg-ttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt
  || |  ||||||||| ||| || |   ||| |||||||||||| |   ||||||| | || || || |||||||||||||||||||| || |||||||||  |             |     ||  ||| ||| |   | || ||| ||   | | || |    | |   |                            
GCAGCAGCGATGAATATCTTCCGGCTCTGCGGCGACATGACCCATCTCCTCAGCGTCGTGGTGCTGCTGCTCAAGATCCACACCATCAAGTCTTGCGCCGgtaagggaag--------agagaaaattttcttcgattcttttgatttcgtgctgcttagaaatctttgcgcag---------------------------

upper sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ30337 (Selaginella moellendorffii), 5'ss of exon 1
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctg-ttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt
  || |  ||||||||| ||| || |   ||| |||||||||||| |   ||||||| | || || || |||||||||||||||||||| || |||||||||  |             |     ||  ||| ||| |   | || ||| ||   | | || |    | |   |                            
GCAGCAGCGATGAATATCTTCCGGCTCTGCGGCGACATGACCCATCTCCTCAGCGTCGTGGTGCTGCTGCTCAAGATCCACACCATCAAGTCTTGCGCCGgtaagggaag--------agagaaaattttcctcgattcttttgatttcgtgctgcttagaaatctttgcgcag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347785|gb|FK313517.1|FK313517
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7028432|gb|AW458215.1|AW458215
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7693494|gb|AW761586.1|AW761586
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207818212|gb|GD790215.1|GD790215
EST:     CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|24136565|gb|BU927075.1|BU927075
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|31561500|gb|CD487338.1|CD487338
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|24136162|gb|BU926672.1|BU926672
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207767184|gb|GD739596.1|GD739596
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGA
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGA
EST: gi|193561865|gb|FK519852.1|FK519852
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAAGAACTCTATGCACTTCGTTTTTGCTTGTCG
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAA-GAACTCTATGCACT-CGTTTTTGCTTGTCG
EST: gi|10232336|gb|BE801224.1|BE801224
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|208194630|gb|GD988501.1|GD988501
EST:     CGTCCTTCTTTCTTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTTCGC
genomic: CGTCCTTC-TTC-TCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTG-TCGC
EST: gi|298188845|gb|HO035538.1|HO035538
EST:     CAGCGTCCTCGTCCTTCTTCCCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|209715072|gb|BW677115.1|BW677115
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|208060969|gb|GD857549.1|GD857549
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|13252025|gb|BG362928.1|BG362928
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|11412647|gb|BF424658.1|BF424658
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207799923|gb|GD770602.1|GD770602
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|151401246|gb|EV271060.1|EV271060
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7588285|gb|AW704084.1|AW704084
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|298185620|gb|HO030833.1|HO030833
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT