1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctgttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt...
species | Glycine max |
transcript | GLYMA08G46570.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|192306206|gb|FG996834.1|FG996834
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|7028432|gb|AW458215.1|AW458215
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|7693494|gb|AW761586.1|AW761586
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|207818212|gb|GD790215.1|GD790215
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|6566143|gb|AW233782.1|AW233782
genomic: CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|24136565|gb|BU927075.1|BU927075
genomic: CACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|31561500|gb|CD487338.1|CD487338
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|24136162|gb|BU926672.1|BU926672
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|207767184|gb|GD739596.1|GD739596
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGAEST: gi|193561865|gb|FK519852.1|FK519852
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGA
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAAGAACTCTATGCACTTCGTTTTTGCTTGTCGEST: gi|10232336|gb|BE801224.1|BE801224
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAA-GAACTCTATGCACT-CGTTTTTGCTTGTCG
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|208194630|gb|GD988501.1|GD988501
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CGTCCTTCTTTCTTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTTCGCEST: gi|298188845|gb|HO035538.1|HO035538
genomic: CGTCCTTC-TTC-TCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTG-TCGC
EST: CAGCGTCCTCGTCCTTCTTCCCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|209715072|gb|BW677115.1|BW677115
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|208060969|gb|GD857549.1|GD857549
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|13252025|gb|BG362928.1|BG362928
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|7147282|gb|AW509204.1|AW509204
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|11412647|gb|BF424658.1|BF424658
genomic: CTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|207799923|gb|GD770602.1|GD770602
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|151401246|gb|EV271060.1|EV271060
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|7588285|gb|AW704084.1|AW704084
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCTEST: gi|298185620|gb|HO030833.1|HO030833
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGAAAAGATGAATATTTTCAGGTTAGCCGGGGACATGACCCATTTGGCCAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtaccttcctttccaatctcaacattcatcgctcgctctgttttgtttcgttgaggatatgtcgtagattttcattgtaataatgctgacgtgtgt
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