1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCGGCGAGGAGCGGGAGATCGGCTCCCGCGGCCTCAAGAAGAAGCTCCTCAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGgtcccgaaatcgcaacgacgccaattcctctgtcgttttcacctttcttcttctttttttcattaattttttttttcgattttttgaattgctag
species | Glycine max |
transcript | GLYMA08G46090.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAG TTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGEST: gi|16996514|gb|BM085886.1|BM085886
genomic: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGgtcccgaaat ... gaattgctagTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCG
EST: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAG TTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGEST: gi|254338207|gb|GR845563.1|GR845563
genomic: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGgtcccgaaat ... gaattgctagTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCG
EST: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAG TTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCG
genomic: CAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGgtcccgaaat ... gaattgctagTTCATTACACGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGGCGAGGAGCGGGAGATCGGCTCCCGCGGCCTCAAGAAGAAGCTCCTCAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGgtcccgaaatcgcaacgacgccaattcctctgtcgttttcacctttcttcttctttttttcattaattttttttttcgattttttgaattgctag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG