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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGACGAAGGAAATGAAGAAGTCTTCGGGAAGCGCAGCTGACAAAAAGAGGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggtttctaattcccatctcaatttttcattctctttactctgctgctctcattgttaatctgactcaacgtgttttctattccattttcgttgct...

Basic information

species Glycine max
transcript GLYMA08G45020.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6725798|gb|AW310197.1|AW310197
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|298190292|gb|HO032413.1|HO032413
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|151394490|gb|EV264361.1|EV264361
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|298182627|gb|HO031362.1|HO031362
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|298191072|gb|HO038551.1|HO038551
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|193367530|gb|FK331236.1|FK331236
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|208143326|gb|GD943240.1|GD943240
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|208163301|gb|GD964411.1|GD964411
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|298167359|gb|HO012622.1|HO012622
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|213607340|gb|DB957148.1|DB957148
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|193306004|gb|FK269681.1|FK269681
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|298176469|gb|HO026704.1|HO026704
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
EST: gi|207766663|gb|GD738291.1|GD738291
EST:     GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGG                         AAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggttt ... ttgttttcagAAACAAGTTGTCAAGAAAGATGTGTTCCAGGTTTTTGCTGAGAAGGTTAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGACGAAGGAAATGAAGAAGTCTTCGGGAAGCGCAGCTGACAAAAAGAGGGTGCGACGCTCATCCGCACCAGATCCCACCTCCGACGCTCCTCCTAGGgttagggtttctaattcccatctcaatttttcattctctttactctgctgctctcattgttaatctgactcaacgtgttttctattccattttcgttgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC