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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGACACGCCTTTTGGATCCATTTTTCTCCGTGAGGCCGTGACGCATCGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttcttcaaattcaataggcaaagccaaatattacaagcactttacctttaaaaaatatattttggagttataagcagctttaatttcatatggggttgtag

Basic information

species Glycine max
transcript GLYMA08G44410.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306569|gb|FG997239.1|FG997239
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|192312658|gb|FK004346.1|FK004346
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|7042339|gb|AW472233.1|AW472233
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|192312657|gb|FK004345.1|FK004345
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|192323021|gb|FK016752.1|FK016752
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|192294522|gb|FG987451.1|FG987451
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|6913352|gb|AW394882.1|AW394882
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|19053064|gb|BM731731.1|BM731731
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|17023264|gb|BM094298.1|BM094298
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|7588400|gb|AW704196.1|AW704196
EST:     TTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: TTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
EST: gi|298181915|gb|HO026090.1|HO026090
EST:     CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACG                         GAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT
genomic: CGCGATTTTGTTTTGGGAACCCGCGAAACTGAATCAGATAGTGCGGCACGgtaagttctt ... ggggttgtagGAAACTAGGAATTAGAGCAATGGCAGAAGATCTGGTGCTGGATACTGCAAT