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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGAGAGTTCGAAGATGTCGGGCGTTACCAACAACAACGAGGAAGACAAGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgtttgttctttcgcttcttttcatttctagggttttgatcttttgttggatcgtgttacttcggtgccgttgatccccgatttttgtctctt...

Basic information

species Glycine max
transcript GLYMA08G43290.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410540|gb|EV280355.1|EV280355
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254342371|gb|GR858533.1|GR858533
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|192323104|gb|FK018935.1|FK018935
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|58018360|gb|CX705102.1|CX705102
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254333462|gb|GR848380.1|GR848380
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|6964300|gb|AW432993.1|AW432993
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|209715507|gb|BW682173.1|BW682173
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|33390052|gb|CA853259.1|CA853259
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|151403288|gb|EV273098.1|EV273098
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|151406937|gb|EV276752.1|EV276752
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|18723759|gb|BM523497.1|BM523497
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254346518|gb|GR856240.1|GR856240
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|13787539|gb|BG650131.1|BG650131
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254336011|gb|GR841336.1|GR841336
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|209715508|gb|BW682174.1|BW682174
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|18735667|gb|BM528902.1|BM528902
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|13789201|gb|BG651792.1|BG651792
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|192322538|gb|FK014659.1|FK014659
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|13791472|gb|BG654063.1|BG654063
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|192309269|gb|FG999146.1|FG999146
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|193371292|gb|FK337771.1|FK337771
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGTTTTTT
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTT
EST: gi|18721133|gb|BM523320.1|BM523320
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|5666632|gb|AI930668.1|AI930668
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|9986733|gb|BE660841.1|BE660841
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|10255190|gb|BE822956.1|BE822956
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|151411716|gb|EV281527.1|EV281527
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|9204037|gb|BE330261.1|BE330261
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|213613520|gb|DB963250.1|DB963250
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|18848610|gb|BM567760.1|BM567760
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254333461|gb|GR848379.1|GR848379
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG
EST: gi|254326995|gb|GR836604.1|GR836604
EST:     AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAG                         GATGGGAATGAAGNNNNNNNCAGGATCAAGAGAAGCACTCAATTGAAGAAG
genomic: AGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgt ... gatgttgtagGATGGGAATGAAGTTTTTTTCAGGATCAAGAGAAGCACTCAATTGAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGGAGAGTTCGAAGATGTCGGGCGTTACCAACAACAACGAGGAAGACAAGAAGCCAACCGAACAGGGAGCACACATCAACCTTAAGGTTAAGGGGCAGgttcgttcgtttgttctttcgcttcttttcatttctagggttttgatcttttgttggatcgtgttacttcggtgccgttgatccccgatttttgtctctt

- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA