1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGACGAAACCCGTCACTCTGATTCAACAACTCTACGACGCCGGCCACCGATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaaaattacctttactcgtattttttatataaatttttttgaattgagattttataattaaaaataaaaatgcttcgttattttcgtcctttattgttagaaatttttagtaatttggttttggggcatgcctgcag
species | Glycine max |
transcript | GLYMA08G43230.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|209708248|gb|BW678618.1|BW678618
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|120530250|gb|EH258384.1|EH258384
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|20498376|gb|BQ273306.1|BQ273306
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|209728275|gb|BW658487.1|BW658487
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|21285679|gb|BQ473550.1|BQ473550
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|298165006|gb|HO011055.1|HO011055
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|20207929|gb|BQ134018.1|BQ134018
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|298163042|gb|HO011775.1|HO011775
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|298179673|gb|HO024888.1|HO024888
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|20449854|gb|BQ253978.1|BQ253978
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|15664325|gb|BI701696.1|BI701696
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|10843789|gb|BF067045.1|BF067045
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|209705383|gb|BW668013.1|BW668013
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTTGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|7926422|gb|AW832448.1|AW832448
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|21993868|gb|BQ785396.1|BQ785396
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|15337855|gb|BI498511.1|BI498511
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|17401932|gb|BM178714.1|BM178714
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|15285565|gb|BI469456.1|BI469456
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAAEST: gi|20207556|gb|BQ133645.1|BQ133645
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
EST: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAG CTTCCTCAAGACGTTGAATGGCATTTCATTGGGCATTTGCAAAGCAACAAA
genomic: GATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaa ... atgcctgcagCTTCCTCAAGACGTTGAGTGGCATTTCATTGGGCATTTGCAAAGCAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGACGAAACCCGTCACTCTGATTCAACAACTCTACGACGCCGGCCACCGATACTTCGGCGAAAACTACGTCCAAGAAATCATCGAAAAAGCTCCTCAGgtgctgcaaaaattacctttactcgtattttttatataaatttttttgaattgagattttataattaaaaataaaaatgcttcgttattttcgtcctttattgttagaaatttttagtaatttggttttggggcatgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC