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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGTGCATGGGGAATACCTCGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTgtaagctttagatgatgttgctgatagaactgattggaatcattcataatgttattttgacatccgttttttcctatttttattgttgatatgcagtagatttgactgattctgaaaattatggtcaaccagtcgatgttaacttgataacattag

Basic information

species Glycine max
transcript GLYMA08G42230.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42230.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0142g00100.t01 (Vitis vinifera), 5'ss of exon 3
AGCAGTGCATGGGGAATACCTCGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTgtaagctttagatgatgttgctgatagaactgattggaatcattcataatgttattttgacatccgttttttcctatttttattgttgatatgcagtagatttgactgattctgaaaattatggtcaaccagtcgatgttaacttgataacattag
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AGTGGTGCATGGGGGATCCCACATGGAACTGATGCTTATCATACATCAAGTGATGTTAGCTTGTTTTCAAGCTCGTTACCTGTTCTGCCACATGAAAAGTgtacgcatgag-------cgcttgcattatagatccttcttgctgaaaat-tgtttttgaaacctaattttttctttcttt---gttaaaatccag------------------------------------------------------------