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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATGAACGGTGAACCGGATCCCCCTTCGAAGTGAATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccgaattgagtttgtgcgttttatacag

Basic information

species Glycine max
transcript GLYMA08G40200.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183625|gb|HO028838.1|HO028838
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTAATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13790566|gb|BG653157.1|BG653157
EST:     ATTATATTGCAGCGATATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATTATATTGCAGCGA-ATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193363683|gb|FK331323.1|FK331323
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298198974|gb|HO042337.1|HO042337
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193342487|gb|FK306103.1|FK306103
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120496264|gb|EH224431.1|EH224431
EST:     CAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7686032|gb|AW756680.1|AW756680
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|192303194|gb|FG997770.1|FG997770
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193476699|gb|FK439546.1|FK439546
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13563498|gb|BG551718.1|BG551718
EST:     CACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|207758371|gb|GD727297.1|GD727297
EST:     TTATATTTGTCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: TTATA-TTG-CAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|9259379|gb|BE347526.1|BE347526
EST:     ATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|6746775|gb|AW317231.1|AW317231
EST:     CCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298176597|gb|HO023184.1|HO023184
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120496411|gb|EH224578.1|EH224578
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120533322|gb|EH261455.1|EH261455
EST:     TGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: TGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7326786|gb|AW620584.1|AW620584
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|192315587|gb|FK007415.1|FK007415
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|27423463|gb|CA934983.1|CA934983
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13252780|gb|BG363683.1|BG363683
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|58018107|gb|CX704849.1|CX704849
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|209707431|gb|BW670672.1|BW670672
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|209726747|gb|BW672474.1|BW672474
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298185073|gb|HO030286.1|HO030286
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|16348314|gb|BI973909.1|BI973909
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|6482125|gb|AW201396.1|AW201396
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298186827|gb|HO033926.1|HO033926
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151409099|gb|EV278907.1|EV278907
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|208116492|gb|GD920431.1|GD920431
EST:     AATTATATTGCAGCGAATCGCACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|207827661|gb|GD800814.1|GD800814
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|213595698|gb|DB962470.1|DB962470
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|58024844|gb|CX711585.1|CX711585
EST:     ATTATA-TGCNAGCGAATCACACACACTTTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATTATATTGC-AGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151399159|gb|EV269030.1|EV269030
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151395682|gb|EV265559.1|EV265559
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|18039091|gb|BM307385.1|BM307385
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7686191|gb|AW756839.1|AW756839
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|38192832|gb|CF922038.1|CF922038
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA