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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCATCCCAGACAAAGAAGATGAATCGGGGCCAATCATACTTCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGgtgagattaaagaagtgctttcatccatacaatttcaaacaccacatcttgccacttcactactattttgtgctataattttttttatgttggttgtgag...

Basic information

species Glycine max
transcript GLYMA08G39720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39720.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0026g00090.t01 (Vitis vinifera), 5'ss of exon 3
TTTGCATCCCAGACAAAGAAGATGAATCGGGGCCAATCATACTTCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCAGTTTTTGATAATATTAAAAGgtgagattaaagaagtgctttcatccatacaatttcaaacaccacat--cttgccacttcactactattttg-tgctataattttttttatgttggttgtgag-
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TTTGTATCCCAGACAAGGAAGATGAAGCAGGGCCGATCATACTTCATTTGGATTCATTGGGTTTGCACTATAGTAGACCAATTTTTGATGATATTAAAAGgtgagacaaaagaggc----ccatgtcaaaattaacaaatattatttgatttactgaataaatgttgtggtaattctaaaactaagtagtttttagtcaatggt