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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGTTCTCTTCTCTCTCTGTTCTTCACTCACTCTCATTCATTCACCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGgttaccctttctctctctatctctaaaagagtatgtattattcaattttttcattcattcgtttatttgttttttattttcttcgttttttgtag

Basic information

species Glycine max
transcript GLYMA08G39420.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39420.4 (Glycine max), 5'ss of exon 1
lower sequence: AT3G60820.3 (Arabidopsis thaliana), 5'ss of exon 1
-----CTCCGTTCTCTTCTCTCTCTGTTCTTCACTCACTCTCATTCATTCACCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGgttaccctttctctc--tctatct-ctaaaagagtatg--tattattcaattttttcattc--attcgtttatttgttttttattttc---ttcgttttttgtag------------------------
      | | ||||  |    |   | ||    ||  |||||    || | ||||||| ||||| || || || |||||||||||||||||||| |||||||| || |    |  |  |   || | || ||       |  |  || | |     || || ||||  ||| | |   | |    || | ||    |||  ||  |||                          
CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314692|gb|FK005960.1|FK005960
EST:     GACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGA--G---G                         ATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC
genomic: GACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGgttacccttt ... ttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC
EST: gi|298165462|gb|HO011511.1|HO011511
EST:     GACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGA--G---G                         ATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC
genomic: GACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGgttacccttt ... ttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC