1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TATTGTTTCGCCTGACAGGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattcttttggggttgcttagaatgttacaaactacaatattctattttaatctcttgg...
species | Glycine max |
transcript | GLYMA08G39420.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|192321731|gb|FK013165.1|FK013165
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|18723284|gb|BM523458.1|BM523458
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|120534402|gb|EH262535.1|EH262535
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGTTTCGCCTGACAGGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattcttttggggttgcttagaatgttacaaactacaatattctattttaatctcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT