Sequence
atgc intronic sequence ATGC exonic sequenceTCTCAGATGCAACAAAACCAGACTGCCCTATCATGTATGCCAGCAGTGGCTTTTTTACTATGACTGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTGgtgagcatgtgccctgcctttctatacatagcaagatatatgctgttttagtcttcatccttagctagtattgagaaaaacaagtttcacattgactaga...
Basic information
species | Glycine max |
transcript | GLYMA08G33560.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G58140.4 (Arabidopsis thaliana), 5'ss of exon 2
TCTCAGATGCAACAAAACCAGACTGCCCTATCATGTATGCCAGCAGTGGCTTTTTTACTATGACTGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTGgtg------agcatgtgccctgcctttctatacatagcaagatat-----------atgctgttttagtcttcatccttagctagtattgagaaaaacaagtttcacattgactaga------
|||| || || ||| | || |||| || || | |||||||||||||| || ||||| |||||||| |||||||| || || ||| ||||||| || |||| | | || | ||| | | | ||| | || ||| || || ||| | | | || ||| | | | | | | |
TCTCTGACGCTACACAGCCTCACTGTCCCATAGTCTATGCCAGCAGTGGATTCTTTACCATGACTGGTTATTCTTCCAAGGAAATTGTTGGAAGAAACTGgtactgctcatctcgtatcttgcttctagtttcattcccagttattagttagaataatattgcttttgaaacccatgccaacttactctgaaatgctcttaatctttgtgggtaaaacgccag
upper sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 1
TCTCAGATGCAACAAAACCAGACTGCCCTATCATGTATGCCAGCAGTGGCTTTTTTACTATGACTGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTGgtgagcatgtgccctgcctttctatacatagcaagatatatgctgttttagtcttcatccttagctagtattgagaaaaac--aagtttcacattgactaga
| |||||||| || |||||||||||||| || |||| |||||||||||| ||||||| |||||||| || |||| || ||| | ||||||||||| |||| || || | ||| |||| | |||| | | | | ||| | || | | ||| ||| | ||
TTTCAGATGCTACCAAACCAGACTGCCCCATTATGTTTGCCAGCAGTGGGTTTTTTAGCATGACTGGTTACACTTCCAAGGAGGTCATTGGAAGGAACTGgtaagttcttgtgtgttcaatctctacaaatttgattatacatcgactccat-tgtggagttaaccagccaaaacttttttttatcttttctatttataag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207745580|gb|GD716396.1|GD716396EST: TGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTG TCGATTTCTTCAGGGGCCTGAGACCGACAAGAATGAAGTGGCCAAAATTCG
genomic: TGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTGgtgagcatgt ... ctggttgcagTCGATTTCTTCAGGGGCCTGAGACCGACAAGAATGAAGTGGCCAAAATTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCAGATGCAACAAAACCAGACTGCCCTATCATGTATGCCAGCAGTGGCTTTTTTACTATGACTGGCTATTCTTCAAAAGAGATTATTGGAAGGAATTGgtgagcatgtgccctgcctttctatacatagcaagatatatgctgttttagtcttcatccttagctagtattgagaaaaacaagtttcacattgactaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA