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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGgtcacgcgctcttctttttctagaaacttttttttttttttggatttgttgcaaattaattttgatgttgtgtgtaatgtatgcatagggcagggttttg...

Basic information

species Glycine max
transcript GLYMA08G28890.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 1
-------------------------------------------------------ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGgtcacgcgctcttc--tttttctagaaacttttttttttttttggatttgttgcaaattaa-ttttgatgttgtgtgtaatgtatgcatagggcagggttttg
                                                       ||||| ||| ||||||| ||||||||||| ||||||||||| |||||      ||  |   | | | | |   || | | | | |  | |  ||| ||         ||||  ||| ||  || |    ||  |       ||     
TGTTATGTTAATTGCTGTTTGTGTCGAAGAAGAGGAAGTAATAAATTAGCTCAAAATGCATTTCACTAAGCTTGATGACTCTCCCATGTTCCGCAAACAGgtttgtttctactacatatctttggttcctgtctatgtgtgcttgtcttgatgtgtccagtcttttagtgtcgtaggttaaaattgggtcatattaggcg---

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 1
-------------------------------------------------------ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGgtcacg-------cgctcttctttttctagaaactt-ttttttttttttggatttgttgcaaattaattttgatgttgtgtgtaatgtatgcatagggcagggttttg
                                                       ||||| ||||| ||||||||||||||||||||||| || |||||||| | |        |||| | ||||  |  |      |||| |||| |||||||| |  ||  | || | |  ||   ||  || | |     |       |      
GTGTTATGGTAATTGAGATTTGTAGTGTGTTCGAGCAAGAATCTCGGTAGCGAAGATGCATTTCGCGAAGCTCGATGACTCTCCTATGTTTCGGAAGCAGgtgagggaagcaatgctcgtgttttgttgtatgtgggttttcttttcttggattttt--cagctgaaatatcttgacctgaatagtattgttgtgaactttg------