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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAACTTAACTCTTAGGGGAGGAGAAAAACCCTTAGCCGCCAGCATTCGTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtatgtgtgtttctgttattctgctgcttatgggaactaaggagggtaaatgggtctttggtgttgcag

Basic information

species Glycine max
transcript GLYMA08G28320.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27808906|gb|CB063328.1|CB063328
EST:     GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|7283962|gb|AW596563.1|AW596563
EST:     GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|151409158|gb|EV278966.1|EV278966
EST:     GAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|17021807|gb|BM092841.1|BM092841
EST:     GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|298197751|gb|HO039290.1|HO039290
EST:     ATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: ATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|151399665|gb|EV269536.1|EV269536
EST:     GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTACGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|213619549|gb|DB957250.1|DB957250
EST:     GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
EST: gi|17154077|gb|BM144010.1|BM144010
EST:     GAGCAAGGGTTCGCACTCGCAG                         ATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC
genomic: GAGCAAGGGTTCGCACTCGCAGgtacgtgtat ... ggtgttgcagATTCTTGAGCAAGAATAATGGGGAAGAAAAGAAAACACAGTGAGACTACTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCAACTTAACTCTTAGGGGAGGAGAAAAACCCTTAGCCGCCAGCATTCGTTGAACTCATTCTTCTTCAACTCAACAGAGCAAGGGTTCGCACTCGCAGgtacgtgtatgtgtgtttctgttattctgctgcttatgggaactaaggagggtaaatgggtctttggtgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG