1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtgtgtgttgatcctttttttttctgtttcttctctttgtgagatactgaaaatcactttttctttgttgacctatgagatctacttgctcca...
species | Glycine max |
transcript | GLYMA08G27670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAG CATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGAEST: gi|207754467|gb|GD730252.1|GD730252
genomic: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtg ... ttgaaatcagCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGA
EST: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAG CATGCTCAAAACNCTTGAAAGGT-CCAGEST: gi|208231918|gb|GE032735.1|GE032735
genomic: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtg ... ttgaaatcagCATGCTCAAAACACTTGAAAGGTACCAG
EST: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAG CATGCTACAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGEST: gi|208024100|gb|GD823744.1|GD823744
genomic: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtg ... ttgaaatcagCATGCT-CAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGG
EST: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAG CATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGA
genomic: ATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtg ... ttgaaatcagCATGCTCAAAACACTTGAAAGGTACCAGAAATGCAGTTATGGTGCTGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtgtgtgttgatcctttttttttctgtttcttctctttgtgagatactgaaaatcactttttctttgttgacctatgagatctacttgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC