Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGCTCTGCGACTTCGGCAACGTCTCCGCCACGTTCCGGTCCGCGGACGCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttgaggtgaaattttagtagcactctttttttcactctagatagattgaatgtgtcatagtgtaatcataattcatattaaagcctccatttaa...

Basic information

species Glycine max
transcript GLYMA08G26320.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g40700.2 (Oryza sativa), 5'ss of exon 1
AAGGGCTCTGCGACTTCGGCAACGTCTCCGCCACGTTCCGGTCCGCGGACGCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttgaggtgaaattttagtagc-actctttttttcactctagatagattgaatgt--gtcatagtgtaatcata-attcatattaaagcctccatttaa
| |||||||  |||||||| |||||||||||  ||||||||||||| |||||||| ||||| |||||||| |||||| | || || |||  ||||||||||||  |   ||||||||    | |    |   |  | ||||    ||| |     | ||   |   | ||  |   |   |  ||  |      ||     || 
AGGGGCTCTCTGACTTCGGGAACGTCTCCGCGGCGTTCCGGTCCGCCGACGCGCTAGGCGTGCAGTCCGTGCACGTCATCTCCTGCGACAACAACAAAAGgtgcag---aggtgaaaccaaaatgtttaacttactcttcatgacagacattgctattgctcggtttggttgagcgaagtagccaagtagggaactatgaata-

upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G026869_T03 (Zea mays), 5'ss of exon 1
AAGGGCTCTGCGACTTCGGCAACGTCTCCGCCACGTTCCGGTCCGCGGACGCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttgag----gtgaaattttagtagcactctttttttcactctagatagattgaatgtgtcatagtgtaatcataattcatattaaagcctccatttaa
|||| |||| |||||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||| |||||| | || |||||   || |||||||||  |  | |    |||||| |  | |   ||   |    |||||     | | |    |||||    ||||    | |        | |||  |  |  | |
AAGGCCTCTCCGACTTCGGCAACGTCTCGGCCGCGTTCCGCTCCGCGGACGCGCTCGGCGTGCAGTCCGTGCACGTCATTTCCTGTGATAGCAGCAAAAGgtgcagaggtgaagagtgaaactgaattgctacatatcacctcacttactgttgttcatttgtgt----gtgtggggagaggcacaggtgaagagtgaaactga

upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G026869_T01 (Zea mays), 5'ss of exon 1
AAGGGCTCTGCGACTTCGGCAACGTCTCCGCCACGTTCCGGTCCGCGGACGCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttg----aggtgaaattttagtagcactctttttttcactctagatagattgaatgtgt-catagtgtaat-cataattcatattaaagcctccatttaa--
        | |||||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||| |||||| | || |||||   || |||||||||  |  |      |||||| |  | |   ||   |    |||||     | | |    |||||   | | |  |  || |  | |      |  ||  |||     
--------TCCGACTTCGGCAACGTCTCGGCCGCGTTCCGCTCCGCGGACGCGCTCGGCGTGCAGTCCGTGCACGTCATTTCCTGTGATAGCAGCAAAAGGTGCAGAGgtgaagagtgaaactgaattgctacatatcacctcacttactgttgttcatttgtgtgtgtggggagaggcacaggtgaagagtgaaactgaattgctac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530667|gb|EH258800.1|EH258800
EST:     GCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAG                         GTATAAAGATAATCGCCATGTGAGCATGGGTGCAGAGAAATGGTTGGACAT
genomic: GCGCTTGGCGTCCAGTCCGTCCACGTCGTGTCGTGTGACGCCAACAAAAGgtgttgttga ... cttgttgcagGTATAAAGATAATCGCCATGTGAGCATGGGTGCAGAGAAATGGTTGGACAT