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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCGGACACGGCACGCGCCTCCCCGCGGAAACCGGAGAGGATGATGACACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctctatttttttttttttttgctttgtgtgtatgcgtgattggtgtgtgtgtgtgtttttttatttatttatagatccaaggtatcgtaatcc...

Basic information

species Glycine max
transcript GLYMA08G25170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713857|gb|BW684050.1|BW684050
EST:     CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTTGCACGATC
genomic: CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTT-GCACGATC
EST: gi|213607114|gb|DB966991.1|DB966991
EST:     CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
genomic: CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
EST: gi|298199297|gb|HO042660.1|HO042660
EST:     CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
genomic: CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
EST: gi|41145846|gb|CK606057.1|CK606057
EST:     CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
genomic: CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
EST: gi|298199367|gb|HO042730.1|HO042730
EST:     CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
genomic: CACTGGCTTTGATGAATGCATTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
EST: gi|192322699|gb|FK014390.1|FK014390
EST:     ACTGGCTTTGATGAATGCATTTGTTCCGTCTGACATGAACCTCATCACTG                         ATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA
genomic: ACTGGCTTTGATGAATGCA-TTGTTCCGTCTGACATGAACCTCATCACTGgttggttctc ... gtacaaacagATGATGATTTCAGGGAATTTGTTGATGGGGTGCCTAGAGGTTGCACGATCA