1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACTATTCTCACAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacag
species | Glycine max |
transcript | GLYMA08G24000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|17401413|gb|BM178195.1|BM178195
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|120493760|gb|EH221927.1|EH221927
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|16346043|gb|BI971638.1|BI971638
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|254349061|gb|GR860333.1|GR860333
genomic: GAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|213596302|gb|DB960231.1|DB960231
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|298171598|gb|HO021190.1|HO021190
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|18848674|gb|BM567798.1|BM567798
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|18730429|gb|BM525872.1|BM525872
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAAEST: gi|9986673|gb|BE660781.1|BE660781
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAA
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|15661777|gb|BI699148.1|BI699148
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|192327448|gb|FK019605.1|FK019605
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|37995461|gb|CF807050.1|CF807050
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|120533815|gb|EH261948.1|EH261948
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|18040394|gb|BM308688.1|BM308688
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|26047693|gb|CA784406.1|CA784406
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|7028501|gb|AW458284.1|AW458284
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|21594964|gb|BQ610324.1|BQ610324
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|15813018|gb|BI785293.1|BI785293
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|254323845|gb|GR840378.1|GR840378
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|33390556|gb|CA853751.1|CA853751
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|26048149|gb|CA784723.1|CA784723
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|37994568|gb|CF806272.1|CF806272
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|213611680|gb|DB969068.1|DB969068
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|17964755|gb|BM271485.1|BM271485
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|6455002|gb|AW185685.1|AW185685
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|209706924|gb|BW661509.1|BW661509
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|151411634|gb|EV281445.1|EV281445
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|21678100|gb|BQ630451.1|BQ630451
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|254325633|gb|GR838514.1|GR838514
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: CTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|209717887|gb|BW666080.1|BW666080
genomic: CTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|15813544|gb|BI785819.1|BI785819
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|7684948|gb|AW755596.1|AW755596
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|7686556|gb|AW757204.1|AW757204
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|120531685|gb|EH259818.1|EH259818
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|6134230|gb|AW132623.1|AW132623
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|7145717|gb|AW507639.1|AW507639
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|21479815|gb|BQ576498.1|BQ576498
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGEST: gi|11413925|gb|BF426000.1|BF426000
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCNTTTTGCAGGAACCAGGCTCTTATEST: gi|10235216|gb|BE804163.1|BE804163
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGC-TTTTGCAGGAACCAGGCTCTTAT
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACAAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACACCTTTTGGAGGAACCAGGCTCTTATGEST: gi|151394633|gb|EV264504.1|EV264504
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTATTCTCACAACATCCACGAGCATCAGCTCCTTCTCCGTCAAAAGACGCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacag
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