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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTCTAGCCCGCCGAGAAAACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcctattgttccatctttaatcttccattgttcttctttaagtctctgcattttgcttaatccgccatataagtgtttagatctgagatttgaattgattgtacgaacgacag

Basic information

species Glycine max
transcript GLYMA08G23750.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617680|gb|DB959348.1|DB959348
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|209713367|gb|BW653864.1|BW653864
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|26046005|gb|CA783377.1|CA783377
EST:     CTAATTCGCTCGCACTTACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: CTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|254347507|gb|GR853756.1|GR853756
EST:     CTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: CTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|151408828|gb|EV278636.1|EV278636
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|213600867|gb|DB968831.1|DB968831
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|192299043|gb|FG992834.1|FG992834
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|298190099|gb|HO032220.1|HO032220
EST:     ACCCTAATTCGCTCGCAGTCACGCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGGTTTTGAAGAAG
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCT-GTTTTGAAGAAG
EST: gi|254325881|gb|GR838762.1|GR838762
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|21602015|gb|BQ612346.1|BQ612346
EST:     CCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: CCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|298186333|gb|HO036966.1|HO036966
EST:     ACCCTAATTCGCTCGCAGTCACGCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGGTTTTGAAGAAG
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCT-GTTTTGAAGAAG
EST: gi|298167477|gb|HO012740.1|HO012740
EST:     ACCCTAATTCGCTCGCAGTCACGCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCTAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|213614186|gb|DB956798.1|DB956798
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|192294789|gb|FG987478.1|FG987478
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTCTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|15285859|gb|BI469750.1|BI469750
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|213604903|gb|DB956306.1|DB956306
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|192294006|gb|FG987175.1|FG987175
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|209700311|gb|BW664537.1|BW664537
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|298169215|gb|HO020575.1|HO020575
EST:     ACCCCAATTCGCTCGCAGTCACGCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGGTTTTGAAGAAG
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCT-GTTTTGAAGAAG
EST: gi|209705304|gb|BW667975.1|BW667975
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|193422808|gb|FK389231.1|FK389231
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTC
EST: gi|213598951|gb|DB964526.1|DB964526
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|8284696|gb|BE022238.1|BE022238
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|192296243|gb|FG991569.1|FG991569
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|10845839|gb|BF068880.1|BF068880
EST:     CTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: CTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|15664210|gb|BI701581.1|BI701581
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|209705404|gb|BW678521.1|BW678521
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|209701110|gb|BW652638.1|BW652638
EST:     CCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: CCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|17023798|gb|BM094832.1|BM094832
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|14258689|gb|BG881597.1|BG881597
EST:     AGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: AGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
EST: gi|298176382|gb|HO023083.1|HO023083
EST:     ACCCTAATTCGCTCGCAGTCACGCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGGTTTTGAAGAAG
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCT-GTTTTGAAGAAG
EST: gi|151404236|gb|EV274046.1|EV274046
EST:     ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCG                         AGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC
genomic: ACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcct ... cgaacgacagAGATGGGTGAAGAAGTGAAGGCCGTGGTTCCAGAGTCTGTTTTGAAGAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTTGTCTAGCCCGCCGAGAAAACCCTAATTCGCTCGCAGTCACCCAAGAGGCGAATCCTTACCATTGCTCGgtacgttcctattgttccatctttaatcttccattgttcttctttaagtctctgcattttgcttaatccgccatataagtgtttagatctgagatttgaattgattgtacgaacgacag

- - - - - - - - - - - - - - - - - - - - - - -  AAGAGG