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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGAATTTTATTGGAAGACATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtattaaaataaagatcgaataatcttatattattcttcttgcgagcattcccagaagaagctcttatgggacatgttttcattcagaatagtatatagtttgatatggggagttattaatcattgattgtcgtgtgttgaattcag

Basic information

species Glycine max
transcript GLYMA08G23380.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATG-AGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|213597388|gb|DB964405.1|DB964405
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     CCTTGGATCTCANCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|209699222|gb|BW664373.1|BW664373
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTG
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTG
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
EST: gi|209709505|gb|BW681208.1|BW681208
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         AAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... ttgaattcagAAGGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTTGAATTTTATTGGAAGACATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtattaaaataaagatcgaataatcttatattattcttcttgcgagcattcccagaagaagctcttatgggacatgttttcattcagaatagtatatagtttgatatggggagttattaatcattgattgtcgtgtgttgaattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT