Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTTGTTACTTGGTTCACTCGAATGGCGACATCCTTGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatcttcagcccttaatttttaagcatgtttaatcgttacttagtttgtttttcgcatctattttgtgtgaatcataaaaaagttactttctttac...

Basic information

species Glycine max
transcript GLYMA08G22430.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845845|gb|BF071195.1|BF071195
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|19936158|gb|BQ080747.1|BQ080747
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|7042125|gb|AW472019.1|AW472019
EST:     TGTCAAACATGTTCTTGAATGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|13790877|gb|BG653468.1|BG653468
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|14992101|gb|BI317774.1|BI317774
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|15000045|gb|BI320859.1|BI320859
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|192326383|gb|FK015900.1|FK015900
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|208291871|gb|GE090655.1|GE090655
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58023967|gb|CX710708.1|CX710708
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58017876|gb|CX704618.1|CX704618
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|192325587|gb|FK019443.1|FK019443
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58024154|gb|CX710895.1|CX710895
EST:     TGTCAAACATGTTCTTGAAGAGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|151412930|gb|EV282742.1|EV282742
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|10255366|gb|BE823132.1|BE823132
EST:     TGTCAAACATGTTCTTGAAGNNAATCGCAGCTCGTTCTCTCAGCAGACNN                         NTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58018211|gb|CX704953.1|CX704953
EST:     CAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: CAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTTTTTGTTACTTGGTTCACTCGAATGGCGACATCCTTGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatcttcagcccttaatttttaagcatgtttaatcgttacttagtttgtttttcgcatctattttgtgtgaatcataaaaaagttactttctttac

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC