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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagtttcatacgttggattgttctctatttcatttcaattcagaaggaccctcatacgccactgttggttttgtaagcttgcttgcttattgtcttc...

Basic information

species Glycine max
transcript GLYMA08G22100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g08560.2 (Oryza sativa), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagtttcatacgttggattgttctctatttcatttcaattcagaaggaccctcatacgccactgttggttttgtaagcttgcttgcttattgtcttc------
 || || ||| ||||||||||||| ||||| |||||||| ||||| |||||| |||| || || || |||||||| || || ||||| ||||| |||||||||      |     |     || |  ||  |    ||    |    |    |   ||||   | |     | |||   ||||  |  ||||   |||        
AGAACCAAGGAGGACAATGAATGCGAGTGAATGTGTTGCCAGGGGATGTGCGCTGGAGTGTGCTATCCTTAGTCCCACTTTTAAAGTGCGAGAGTTTCAGgtatgtgcccgctt-tcaccctgctgccttctctgctttggct----atctgcacaatacattaatagaaatcttgct-gcttcatgccttaaaatctctaattaa

upper sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagttt-catacgttggattgt-------tctctatttcatttcaattcaga--------aggaccctcatacgcca--ctgttggttttgtaagcttgc---ttgcttattgtcttc----
|||||| ||||| ||||||||||| |||||||||||  | ||||| ||||| ||| | || || ||||| ||||| || || ||||| || ||||| |||||||  | | ||||  |  | ||         ||  ||||| | |  | ||   |        || ||  | |||| |||   | |  |  | || |  ||     ||  || ||||  ||    
GGAGCCCAGGCGTACAATGAATGCAAGTGAGTGTGTGTCGAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaatttgtgcatatctatgcttaagtaaatgtcgttattttaatgtacttgtaagcaactcgagaactgttatactccaggttatctgactagtcatattatgatttattttttgttctcttag

upper sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaa-gtttcatacgttggattgt-------tctctatttcatttcaattcaga--------aggaccctcatacgcca--ctgttggttttgtaagcttgc---ttgcttattgtcttc----
|||||| ||||||||||||||||| |||||||||||  | ||||| ||||| ||| | || || ||||| ||||| || || ||||| || ||||| |||||||  | | ||||  |  | ||         ||  |||||   |  | ||   |        || ||  | |||| | |   | |  |  | || |  |||    ||  || ||||  ||    
GGAGCCCAGGCGGACAATGAATGCAAGTGAGTGTGTGTCAAGGGGATGTGCCTTGCAGTGTGCCATTCTCAGTCCGACCTTTAAAGTTCGCGAATTCCAGgtaattggtgcatatctacgcttaagtaaatgtcgttattttcatgtacttgtaagcaactcgagaacttttatactctagattatctgactagtcatattgtgatttattttttgttctcttag

upper sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 1
GGAGCCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCTAGGGGCTGTGCGTTGGAATGCGCAATTCTTAGTCCAACGTTCAAAGTACGAGAATTTCAGgtaaagtttcatacg--ttggattgttctctatttcatttcaattcagaaggaccctcatacgccactgttggttttgtaagcttgcttgctta--ttgtcttc---
||| |||||||||||||||||||| ||||||||||| || | |||||||||  |  |||| ||||||||||| ||||| || ||||| ||||| |||||||||||  | | | |   || | ||||    |||||  |||   |   ||||       ||| |    ||||| |||| || |  |  |   |||  ||  |||    
GGAACCTAGGCGGACAATGAATGCAAGTGAGTGTGTGGCCAAGGGCTGTGCTCTACAATGTGCAATTCTTAGCCCAACATTTAAAGTGCGAGAGTTTCAGgtaaaactcctttcaacttaggttgtatcttattttctttatttattgaagtga---aatatg----tgttgcttttttacggctattgagttaaatttccttggtt