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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACTGCTCCAATCTCCCCCTCTTTGATCTCTCACTTCAACCACGAGATGCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAGgtatttcagctcaccgatcaaattcaacttctgggtatttctgcatatttaattatgatttgtgggtcgttggcaataaaacttttttttttctttttgt...

Basic information

species Glycine max
transcript GLYMA08G20930.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303725|gb|FG994563.1|FG994563
EST:     GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTCCGTTCGAATTCTCGAG                         AAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAACGCTGAATGTTGTT
genomic: GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAGgtatttcagc ... gttttgacagAAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
EST: gi|151394546|gb|EV264417.1|EV264417
EST:     GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAG                         AAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
genomic: GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAGgtatttcagc ... gttttgacagAAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
EST: gi|26268038|gb|CA819101.1|CA819101
EST:     TCGAATTCTCGAG                         AAAGCAATGTATCCTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
genomic: TCGAATTCTCGAGgtatttcagc ... gttttgacagAAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
EST: gi|15286250|gb|BI470141.1|BI470141
EST:     GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAG                         AAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT
genomic: GCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAGgtatttcagc ... gttttgacagAAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTT